Array 1 1521-2182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONJ01000012.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00011.11_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 1521 35 100.0 35 ................................... GCCTTTTGTCGCAAGTGTTGCCGTACCGGATAACG 1591 35 100.0 35 ................................... GCAACATATGCTTCATCGGGGAAGAGTTCTTTCCC 1661 35 100.0 35 ................................... CCGGAAGCAATTCCCCCAATGGCCTGTCCAAGCCA 1731 35 100.0 34 ................................... TTAATTGCCGGATACTTGAGATGGAACTTGTCAC 1800 35 100.0 33 ................................... ATATCATCATCAAGAGTCTGCCTTGCATCACAA 1868 35 100.0 34 ................................... GTTTATGTAAACTCTTAACGAGTAACCATCTTAA 1937 35 97.1 36 ....................A.............. CAGACCATACCTTTTCAGACGGGATCTTTACCATCT 2008 35 97.1 34 ....................A.............. CTGATGCTGCGAATCTGCCAGAACTCTTGCGACC 2077 35 100.0 35 ................................... GGTGTACTTGTTCCACTCAATCCACTTATCATCTT 2147 35 91.4 0 .....T.........T............G...... | G [2179] ========== ====== ====== ====== =================================== ==================================== ================== 10 35 98.6 35 GTTTGGAGAACAGCCCGATATAGAGGGCAATAGAC # Left flank : GGTCTTTGGTAAGTCGCTTAGCGAGAGTGAAGCGTTAGCGATTGTTGCAAGCGGGATTGGTTCAACAGTTGGTAAGGCTGTTTCCAAAGCGATAGTTAGCCGTATTCCTGGATTCGGCAATGTCGTGAATGCGACGATTGCTGTTGCCATTACGGAGAATCTGGGATGGTTGGCTGCAAGTCAATTCGCAGATGAGAGGGACGCTGCTCTGGCATGAAGATGATATCGTATGGGTTGGGTAAATCTCGGCCTATACGATGTTATGAAAAATTTGTTTCGGGTCGAAAGTAGACACTCAAGGGTTGAATGGATTAATATGCTGGTTTATAATCAAACGAAACAAATGCGGTAAGGTTTTGGGCCGATATGGCGTAAATTCTAACGTTCTGAGCTTCGGAGAACATAAAATGTTGAGGAGATTGTCTCTGACATGGATGATGATTTTTTCGGCCGATAAATGCCTAAAGACCCCGCATAATACCTGCCTTATAAAGAGCAGG # Right flank : CTTTGGCTGCATGACTCGATCATTAAGCCTGAAACTAAGTTTTCTTGTGTTGAAATCTTCCTAATACTGAGGTCGTAAGACCATCTTGATTATTCACGAATCTGTGACTCTGTTCTGAGAACAATCTCATACTATAAGGACAATGTTTTTTGAAATGGAGGATTTAGAAATGGAAGAAAGAGAAAACAAAATGAGTTTAGGTGATGTCTGCAATCTGCTTGGATGGACAATGCTGATTTTAGGAACCATTGGCGCATTCATTCTTGCAAACGTATTTGGAACGGAAACAAGAGGGTACTACTATTCGTATGAGGCTCGTGATTGGAATACTACTCTCGCGATTTTTTTTGGAACGCTCCTTCCGGTATGTGCGACCTCATTCCAGCTGTTGGCAACTGCAAGAATTATGGAGGTTCAGCAGGAGATTCAGGAAAAACTGAATGCAAATTGATATTCCAACCTTTGAGAGTTAATTATACATAACCGTACCGGTCATAACT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGAGAACAGCCCGATATAGAGGGCAATAGAC # Alternate repeat : GTTTGGAGAACAGCCCGATAAAGAGGGCAATAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 46152-45633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONJ01000009.1 [Clostridium] aminophilum DSM 10710 BR86DRAFT_scaffold00008.8_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 46151 35 97.1 32 ......A............................ GGTATCCTCACGGACGAAAGAAGTTTTTGCAA 46084 35 100.0 32 ................................... CTGTGTCGCTTTGTCAAGTTTTACGGATTCTG 46017 35 100.0 39 ................................... GATACTGTTCAAAATGTTTCATAACAAGTCCCTCGCAAA 45943 35 100.0 34 ................................... ATAAACCACTTCACCGAGTAGCGCATATGTTGCT 45874 35 97.1 34 ..................T................ GGAAAATAGCGGCGTCTTGAACTTGCGGTTGCCG 45805 35 100.0 35 ................................... ACGAAAGCACCGTAATCGCTGTATGCCATAATTAA 45735 35 100.0 33 ................................... CAATTCAGTGCTTCCTCCTTCACTACCTTCTCT 45667 35 91.4 0 ................................CGT | ========== ====== ====== ====== =================================== ======================================= ================== 8 35 98.2 34 ATTTAGGAATAGATTCTCCGAAAGGAGATGGAAAC # Left flank : CCATTGATTCTTTGATTTGCCCGTATGGTAAAGAAGATATTATCAACGCTATAAGGTTTTTTAACAAGAATTATAATGAGATGTTTCGCGACGTCTTTCCGAAGTTCACGCCAGGAAAAACGGATTCTGTCTATTTGGGAGGCGGAACAGGTTTTGTATCAAAAACAGTGATATATCCGTTGTTTGGGAAGCGAAATGGGATTGATGTGACAGTGAATGTTTTCGGTGCGACAAAAGTGCCAAGAAACCATAAGCATAATTTGGATAGGCAGATCGGGGTTTCACCACATATACTTAAAATGACATATTATTATGGAAAAATGTTTCATATGGGCGAATGCAGATGGCGGTTTTGTTGATGGATTTTGCCGCGATGCCTAAAAATACGGGCTTTACAACGATTTTTGGGCATCCGGCGTTTATCTCTATAGGCTGTTTGCAGTTTTGCCACGCAAATCGATATCTGAACCACGATTTTATCAGGGAATCAGAGGATGGGA # Right flank : TTTTTAAATTGCAAATCATGGTAGACCCATATAATCTGAGGTTATAATATGAGTGTGGTATATATTACAGAAAATGGTGCAATGTTAACTGCTGAGAATAATCGTATCAATATAAAATATAAGAATGGTTTGCTGGAATCGTTGCCCGTAGAAACTGTAGAGTGCATTATCTTGTTGGGAAAGGGGCAACTATCTACACAGTGTATGGAAACATGTATGACAAAGGGAATACATGTTTCCTTTTTCTCTAAGGGGGGACGATATTTTGGAAGACTAATGTCTACGGGTCATGTAAAAGCTGAATTGCAACGGAAGCAGGCAGCACTATATGAATCACAATTTGCTATAGACTTGAGTCGAAAAATTATTAATGCAAAAATAGCAAATCAGATTACTGTTTTGAGAAGATATGCAAAGAGTAGGTCAATTTGTGTGGACGAAGAAATCTTTAATATGCAAAATAGTAGAAAAAAAGTTATGCAGGTAAGTACAATATCTGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAGGAATAGATTCTCCGAAAGGAGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //