Array 1 46142-48793 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQO01000024.1 Cronobacter sakazakii strain GK1029 csakGK1029_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46142 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 46203 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 46264 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 46325 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 46386 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 46447 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 46508 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 46569 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 46630 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 46691 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 46752 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 46813 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 46874 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 46935 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 46996 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 47057 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 47118 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 47179 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 47240 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 47301 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 47362 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 47423 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 47484 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 47545 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 47606 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 47667 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 47728 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 47789 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 47850 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 47911 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 47972 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 48033 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 48094 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 48155 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 48216 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 48277 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 48338 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 48399 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 48460 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 48521 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 48582 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 48643 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 48704 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 48765 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75230-76357 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQO01000024.1 Cronobacter sakazakii strain GK1029 csakGK1029_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75230 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 75291 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 75352 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 75413 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 75474 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 75535 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 75596 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 75657 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 75718 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 75779 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 75840 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 75901 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 75962 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 76023 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 76084 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 76145 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 76207 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 76268 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 76329 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76726-76577 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQO01000005.1 Cronobacter sakazakii strain GK1029 csakGK1029_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76725 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76665 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76604 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //