Array 1 42301-42451 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDMA01000001.1 Ralstonia solanacearum strain B50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42301 29 100.0 32 ............................. GCTCAGATCGAGTTCACGCGTTTGGCGCAGAC 42362 29 100.0 32 ............................. GTGCAGTTCCACGACGCAGTTGCCGATGCCGC 42423 29 62.1 0 ..................NNNNNNNNNNN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 87.4 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNGTAGGACTGCGTGATCACGCGCTCGTCGCCGCGACGATTCTCGCCCATGAGCAAGCACAACTGCTCGGCCTCGATCCAGCAAGCCGCGCCCCGCGCCTTGCCGTACCCTACCAGGGCCGTGGCGATCTCGTTCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCGGCGCCCGCTCGCTCTCATTCGAGTACCAGTACACGCTAACGCTGATCGTGACCGACTACCCCGACAGCTCGGACACGATCGTCGTGCCTGTCCTGGCCTGGCTGCGGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGATCTCCCGGGCGACAACATCCTGATGCCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGGCAACGGCGCCTGCTTGCTGGCTATGATATCGATCCCGCCCAGGCGCTGGGCTCGGGCTTCGAGGATGTCCGCAAGGACATGGTGATCATCCGAAGTATTGCCGTGCATGGCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCGGCGCCCGCTCGCTCTCGTTCGAGTACCAGTACACGTTGACGCTGATCGTGACCGACTACCCCGACAGCTCGGACACGATCGTTGTGCCCATCCTGGCCTGGCTGCGGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [18.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 428567-427441 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDMA01000001.1 Ralstonia solanacearum strain B50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 428566 29 100.0 32 ............................. GAAGTATTCGACGGTGCAGCCTCGGTACTCCT 428505 29 96.6 32 ............................A AGAGGGGCCTCCACCGGGGTCACTACTACGGC 428444 29 100.0 32 ............................. TTGCTTTGAATGCCCGAGCCGCACAGTTCGCC 428383 29 100.0 32 ............................. ATGTGTGGATTTTTTTTCGGTCGAGCTTGGCG 428322 29 100.0 32 ............................. CGTTGCCGTGCTGACACGGTTCTTGTGCGAAC 428261 29 100.0 32 ............................. GCATCGGGCCAAGGGTGTCCCATCCGCGAACT 428200 29 100.0 32 ............................. CTCAACGAAATGGCGAATCTCCGCATCTCGTG 428139 29 100.0 32 ............................. AGCCCAGCATCGCTGGGCTTTTTCCTTTTGGT 428078 29 100.0 32 ............................. TCACGTGCAGCCTCCATGTGGATTTCTTCGAT 428017 29 100.0 32 ............................. ATTTTGAGTGCTGCCTCCACCGAGGCACCTCA 427956 29 100.0 32 ............................. CGTGGACTTGAATCCCAACTGGCGCAAATGAA 427895 29 100.0 32 ............................. AACGTGACGTGGCCGCGCGAGTGCGAAAAGTT 427834 29 100.0 32 ............................. CCGTAGTAGTGATCCCGCCCTCGAAAGAGGGG 427773 29 100.0 32 ............................. CAATTCTTCTCTTCCATAGGACTCACACATCA 427712 29 100.0 32 ............................. GGACGCCCCCTGGGCGAACAAGCGGGAAAGCT 427651 29 100.0 32 ............................. GCGTACCTGTTCAGGGAGCCGACGACTAGCAC 427590 29 100.0 32 ............................. GCCGTCGTGATCCGCAGGTTCGTATGCCGAAA 427529 29 100.0 32 ............................. CAACAGCTAGACGGCGCCAGCGGCACCGTTAC 427468 28 82.8 0 .A......T.A-...............T. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGCAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : TCGTGGTCAAGTAATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGCACCGGCCCGTCGGCGGTGGCCAGGTGGATGGCCGAATCGAGCGCATCCAGCTTGAGCTCGACCAGCAGGTCGGTGCCGCCGTCCGGCGCCATCGCGGCGTTGACCACCATGCCGCACGGCTGGTTCGGGTCGGATTCGCTGAAGACTTCGGCGCCGGCCGAGGTGGGCGCATTGACATGCGCCCGCTGCATGCGCCGCTTGAGCGTGCCGCGATACTGGCTGCGCGCCACGACTTCCTGGCCCGGATAGCAGCCCTTGCGGAAATCCACGCCGCCGACCAGTTCGAGGTTCACCATCTGCGGCACGAAGTGTTCCTGCGTCGATAGCGTGATCGACGGCACACCCGCCTGCAGGCCGAGCCAGTCCCACACCTCGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2857511-2858088 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDMA01000001.1 Ralstonia solanacearum strain B50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2857511 29 100.0 32 ............................. CGGGGCAAGAATGGAAGAGCATGGAAACTCGG 2857572 29 100.0 32 ............................. CCCCACTGACAGATGAGCAGAAGGACAAGATT 2857633 29 96.6 32 ............................T GAATCCAGCGTATGCGTTGCGGCAGGGCGGCC 2857694 29 100.0 32 ............................. CCGACAGATCTACTGATTCTTCGATTAGCTTC 2857755 29 96.6 32 ............................T CTTGAGCAGCGCCGATGTGCTACCGGGTGCCG 2857816 29 100.0 32 ............................. GCGCTTGGTGCGAAGTTGCTCCCGGACATGGT 2857877 29 100.0 32 ............................. CAAGCCCGATGTGAGCCATGTGCGCCCTTTAT 2857938 29 100.0 32 ............................. TCCATTCCAACGTGCAACTTGTCGCCGTCGCG 2857999 29 100.0 32 ............................. CGGGCCGAGCTATGCTGCCGGCCCGCTATGAT 2858060 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCTATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTATACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GTCGAGATTTGCTCCTGTGTGTTGGATGGTCTGGTGTTCCCCGCGCCTGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGGCTGTAGTACTAGGCTGCCTGATTTGCAGTCAGGACGCGCAATGGGATTCCCGTTTCCAATCGGTTGGCTGCCGTCGCCCGCTGTCGAGCACAAGCACGCGCCTTCGCCTTCGACCACCACGCAGGCAGACACGCCGCCGCGTCCCGCGCAGCCGGCCAGGGCGCCGGCGAAGGCCTCGTTCCTGGAACGCCTGGCGAGCTTGCGCGAACGATCGCAGGCCAAACCGGCCCCCGACCTGCCAACGGAGATATGGGGGGAAATCGCGCGCTGCGAGCCTGCGGCCGTTCCACGGATGCGCGCGGTCAGCAAGGCGCTGAGGGCGGGTGTCAATGCCAGCATCCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4366690-4367512 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDMA01000001.1 Ralstonia solanacearum strain B50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4366690 29 100.0 32 ............................. GCTACCTGCAGGCCGATGTCCGCGTGCGCTAC 4366751 29 100.0 32 ............................. ATGAGTCAGCAACTCGCCGATTGCTCGCAATT 4366812 29 100.0 32 ............................. TTGAGAGTCACTGAACGTGTACGGCGTGAATG 4366873 29 100.0 32 ............................. CCCTACATGGACCTGCGTGCGCCGATGTTCAG 4366934 29 100.0 32 ............................. ACGGCGTTCGCGGAGCACATCTCTGGGGAGAT 4366995 29 100.0 32 ............................. CTCGTACACTGGGGATCGAACCCTATCATCGC 4367056 29 100.0 32 ............................. GATTTGCGGCCGGACTGGCGCGAGATTTGGCC 4367117 29 100.0 32 ............................. CCTAGCGTCATGGGCAGCGAGCTATACGGCAA 4367178 29 100.0 32 ............................. CTATTCCAGCTCCGTGAACACGGCCACGCGCA 4367239 29 100.0 32 ............................. CCAGACGACGGAATGATTGCAGCTTGCTTAGC 4367300 29 100.0 32 ............................. CAGTGTTTGGCAATCGAGCGCCTCACGCGCGG 4367361 29 100.0 32 ............................. ATGAGTGGGTTACCCGTCGCGGCGGCTTTTAT 4367422 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 4367483 29 86.2 0 ...........A.A..........CG... | C [4367488] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.5 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : AAGGCACTACTGGCCTTCCTGCAAAGTCTTTGATTATGTGAAGCCGGATTTACTCGGAAAGGCCCGCCACGAGGGGCAGTCCTTCGTGATGGGCCTAGCTTCGCATAATCTTCGACTTCGCATTATTCCCTCCTTACGTGCGCCGGGGCTTCCCCCCTTACCAGCACGCCTGACGCCGGCGGGCAAACGTCCCGACTTGCTTTTGCAACAGGCGGCTTGATCAGCGTGGATCCATCCGCTCTCCACCCATTCAGCCAGCCCCCAGAAAAACCCGATTACCCGATAGGATTATTTCGAAAGACCTAAGGAAGGTCTGCACAAACCGGCGGGGCCTGTGGTTGCAAGCGGGGGGGGGGGCCGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGCCCGCAACTGGCTTGGCTACTAATCGGAG # Right flank : GCCAGTGGCCATCCAGTCGATGTCACGACCCGGATGCCGCTACACGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGGCGCAGCGCGTCCGGGCCGCTGGCGGCGACGCGACGTCGCCGCAGGGCTGGATCAGTCCGCCAGCGCAGCGCGCGCAGCGCCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //