Array 1 3408-3253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCUA010000019.1 Campylobacter hyointestinalis subsp. hyointestinalis strain TTU_618 NODE_19_length_20199_cov_157.557857, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 3407 27 100.0 35 ........................... ATACCCTGTGCTATATATATCCATCTATTTTTTTG 3345 27 96.3 39 ........G.................. ATACCGCAGATCCACCTTATGTAGGCACGGAGAATTATT 3279 27 96.3 0 ........................A.. | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 97.5 38 AGTTTCAAATCCTAAAAGGATAAATTT # Left flank : GAGCTATTAGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGCATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAACCAAAACCATAATAATAAAACTAAACATTTACAAGCCTTTTTTAAAAAAAATACCATAAAAGGATTAAATATGTCAAATGCTACTTTAACCTTTGGAGTGGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATTAACAAAACAACAACCACCCTAAGCGATGCCCTAGATAAAAACATAAAAACAGCACTAACAGCGATAAAAAACGCAAATCACAAAA # Right flank : TATACTTAAAATACCTAGCAATGCTATCTATTTCTTCATCAGTAAAGCAAACCCTTTTAGTCTCTCTAATACTAGCAAATAGCTTTTTAAAGTTTGGCTTATTTGCAAACTCATAAGCCCCCGTGCTTTCTAGCATATCTAAAGTACTTTTTAGAGTTCCCATTATATGATTAAAGGTTTTCTCTTTGTATCTCTTACCATTTATCCCAAGTATTAACATTCTCCTTTTTAAGTTTAGTAATACTTCATCCGTGATAAGAGATATATCAATATCACCCATTATCTTAATAAGTGTATTAATCCTTGAAGGTGGATTTTTATTGTCTTCTAAAAATTGCCACACTCTTTCTATCATATAATCCTTAGCTTCACTAAGTAAAAAAGGTTTGTTTTCTTTTGGTGTTTCTAATAACCAATCTAACCCGTTAAAGCCTAATTGAGCAGGTGTTAATAGTGCTGCTTGTAGGCTAACCTTTAAGTCCTTTTCACATTTTTTAGCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCAAATCCTAAAAGGATAAATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 9141-127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCUA010000027.1 Campylobacter hyointestinalis subsp. hyointestinalis strain TTU_618 NODE_27_length_11814_cov_25.492777, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 9140 30 100.0 38 .............................. AAAATGTTGCTGTTGTGCTTCCACCTGCAGGTATTAGC 9072 30 100.0 35 .............................. TCTTCAAAGCTGACGCTCCTATATGCTCCATATCT 9007 30 100.0 34 .............................. CCACTACCTGCAACTTTTGTGGAGCTTTTAGAGC 8943 30 100.0 34 .............................. AAGTTGATAAAACTAACGTTGGAATAATTAAACT 8879 30 100.0 34 .............................. TCTAAGAAGTGAGTTAAATCCCTCTATAAACGGA 8815 30 100.0 35 .............................. ATGGAAAATCTGCTATTAAAACGCCTTGAATATGA 8750 30 100.0 35 .............................. AACCAAATTCTAATCCGACACAAGCTCAGAATACT 8685 30 100.0 35 .............................. TAAATTACGAAAGAAGCGAAAGTAAAAAAGGTAAA 8620 30 100.0 34 .............................. GTTGTGCCTCTACTTCTTTTCTGCCTTGTTGCAA 8556 30 100.0 36 .............................. TAGTTGGTGTAGAGATAAAGCGAAACAAGGCTATAA 8490 30 100.0 35 .............................. CACGATTTTCAAAGAGCGTCGTTGAATTTGGCAGG 8425 30 100.0 34 .............................. TATCTTTGATATCATCACGCAAATCACCGATGAA 8361 30 100.0 34 .............................. ACGATGAGAATGAGGCAGAGACTAGCTTTGATAT 8297 30 100.0 38 .............................. GATATTTATACGGTATAAGCGGAGTGAATGGCGTTAGC 8229 30 100.0 33 .............................. ATGTCAGTAGTGTCATGTTCAACAGTCTTTTCG 8166 30 100.0 36 .............................. TATCGTCACTTTGGTCACTATAAACCTCTAAGTCTG 8100 30 100.0 37 .............................. CCTACCAAAGTTTCGATGCCAAGGCTATTTTCACGCT 8033 30 100.0 36 .............................. TTTTATCTTTTTTTGCTTATTTGGCTTCTTTAAAAA 7967 30 100.0 35 .............................. CTGCTTCTAATTCCTCGAATAATGGTAGGTAGCAA 7902 30 100.0 35 .............................. TTTTACTTTCAAGCTCATCAGCAAGGGCGGTAAGC 7837 30 100.0 38 .............................. TTAGCTATACAGGCTCAGCACAAGATTTCGTAAAAAAT 7769 30 100.0 35 .............................. TCGACGTAAGCCGACGTTTCAGCTATTCCAGCCGA 7704 30 100.0 34 .............................. GATTTCATTCTACCAGCCGATGCTATTGATAGCC 7640 30 100.0 35 .............................. TATTTATGCTACGGTTGGGCTTTTAATAGCCCTTT 7575 30 100.0 34 .............................. AATATTGCCCTAAGTCTTTCAGCTTCGGCATTGC 7511 30 100.0 35 .............................. GAAATGTTGCCGTTGTGCTTCCACCTGCAGGTATT 7446 30 100.0 36 .............................. TTTTTTGCTATCACTCTCATTTTTTTCCTAGTTTAT 7380 30 100.0 36 .............................. AAAAGACAATTACGGTAGATTTATCGGAGGCTACAA 7314 30 100.0 36 .............................. AACATTTTATAAGCTTACTTATGGTACTATTATAAA 7248 30 100.0 35 .............................. ATCACGCTAAACGGAGCTACGATAAATCTTTCAAA 7183 30 100.0 34 .............................. TTACGGACAAACGCAAACGGCTGGGCAAAATATA 7119 30 100.0 37 .............................. TAATTTGATAGAGGCGTATCTGTGTAGTCGCCGTATG 7052 30 100.0 35 .............................. GAGCAGAAAAAGTTCCTTTATTATTTTCGCCGCGA 6987 30 100.0 36 .............................. CGTAAGTATTCATAGCGGTCGCATCTGTAGCCCCAC 6921 30 100.0 36 .............................. AATACTGATATGGTATTAACGGGGTGAATGGCGTAA 6855 30 100.0 39 .............................. TTTTACTTTCAAGCTCATCAGCAAGGGCGGTAAGCTCTT 6786 30 100.0 37 .............................. AACCTGCATCGCTATCATATGGCGGTTCATCATATGA 6719 30 100.0 33 .............................. TCAAGATAACAAATATTTCCCTGAAGTGCTAAG 6656 30 100.0 33 .............................. AAGATATAGCGGTATTTAATATACCGCCTTTAT 6593 30 100.0 33 .............................. TTATAAATTTCGCCATAAGCAACATTGTAGGCT 6530 30 100.0 39 .............................. GAGCTGTAAGAGCTTGAGAAATAGCGTCAAGTTTTGCAG 6461 30 100.0 35 .............................. GCCTTTTCTTTTTCTTTTTGCTCTTTAAGCCAACC 6396 30 100.0 36 .............................. CACGATTTTCAAAGAGCGTCGGTGAATTTGGCAGGT 6330 30 100.0 37 .............................. TTTTTTGCTATCACTCTCATTTTTTTCCTAGTTTATT 6263 30 100.0 34 .............................. ATCCCTTTTTTTGAAAAATATGACGGCATCACAA 6199 30 100.0 37 .............................. GCTGTATATCGTTCGCTTGTGAAATTTCACCAGCTAA 6132 30 100.0 34 .............................. GCTCATATTCTGACACAAAGCACCCCCACCCAGC 6068 30 100.0 37 .............................. TAAAAAAAGCTATGCCGAAGCAAAGCCGAACACTATA 6001 30 100.0 37 .............................. GTCTTAATTATAGCCGTATATGAAAAGGTATTATCAT 5934 30 100.0 35 .............................. GAGAGCCTTGCGAACACGAGCTATATAAAGAGGGT 5869 30 100.0 35 .............................. ATTCATATTCTGACACAAAGCACCCCCACCCAGCC 5804 30 100.0 35 .............................. AAAGCGTGTATTGAAGCGTGTGAAACAAAGGTAAG 5739 30 100.0 37 .............................. TTATTATTAAAATCTATTTGTTCCCTACGCACATCAA 5672 30 100.0 36 .............................. ATCAAAAGGGTCTGCATCGTCTGCAAATTGAGTTAT 5606 30 100.0 34 .............................. CATATTTCAGTTTTAGATAGCCCCATTTCATAGT 5542 30 100.0 36 .............................. TAAATTCAAAACGGACAAAAATAGCGGACAGATAAC 5476 30 100.0 35 .............................. GAAAGCCAAATAGTGAAATTTGGATATCGTTTAAT 5411 30 100.0 39 .............................. GGAATTGTTTTAGTTGCAGAGTTATCCCCAGCACCTACA 5342 30 100.0 36 .............................. AAATTTTCAAAACAATCAGTATCACAAAGCCTAAAA 5276 30 100.0 35 .............................. GCCTGTTCAATAGCTTCAGCCTCATTTGCTCTATT 5211 30 100.0 38 .............................. GCTTTATTTTCATCTTTTCCGTGTGTGTTTGTCGCGTC 5143 30 100.0 36 .............................. TAAATAGTATTATCACAAAGATAAAGGATATTTTAT 5077 30 100.0 36 .............................. ATAGCGGTGATGATATTGACGTTAGAATTTTAGACA 5011 30 100.0 36 .............................. TTCCCAGCTTGTGTCCAACTAGCTACTTCTTGTTTT 4945 30 100.0 34 .............................. ATAAAGTTTTTGGAATTCGTATCTGTATGTTTGA 4881 30 100.0 38 .............................. TTTTTCAAGCCCTACACAAAATCAAAACTAAGGAAATA 4813 30 100.0 35 .............................. CTTCATTTCCAAGGCTTAGAAGTTTTGTAGGCACT 4748 30 100.0 35 .............................. ATATTTTCAGAAAAAAGACAATAGAGCAACCAAAA 4683 30 100.0 35 .............................. CTGCTTTCGTTTGATTTGTAGAGTGTAGCGGTATC 4618 30 100.0 35 .............................. TAGTTCGATAGAGGCGTATCTGTGTAGTCGCCATA 4553 30 100.0 36 .............................. ATGGCAAAATATACTCATATGATGAACCGCCATATG 4487 30 100.0 39 .............................. TAAGTTTTGCTGATGGTTGTAGCTGTGGCGACGGAACTA 4418 30 100.0 37 .............................. GTAAAGTAACAATAGAAAAGTCCGAAGTTTGGCAAAG 4351 30 100.0 34 .............................. GAAAAGTGGATAAATTTTCAAAACAATCAGTATC 4287 30 100.0 34 .............................. ATACTTATAGGCGAAAAAGGCACTATGCTAGAGA 4223 30 100.0 36 .............................. TAACCGACCCTGATAGTGGCTATATGGGAGCCGTGA 4157 30 100.0 36 .............................. AATTCTTTTTGGATATAAGGTGCGAATTGATTAAAT 4091 30 100.0 37 .............................. TTTTTGATAGATTTGTATAAAGCCCTTTAAATAAAAA 4024 30 100.0 36 .............................. TATCTTTTTAAAAACGATGCTACACAATCGTAATCA 3958 30 100.0 35 .............................. CGCTTTGGCAGGTTGTGAGTATTTGTGCTCTACCC 3893 30 100.0 37 .............................. AATTCTCTGAAGTAGTCTCTGAGTAATCTCTGAAGTA 3826 30 100.0 35 .............................. CTTAGCGTTCCAGTTGTAACCGACGGCTGAAAATC 3761 30 100.0 34 .............................. TCACAAATCGGAATAAATCTTGATAGCCTAATCG 3697 30 100.0 37 .............................. CTAAATATGGTCTTTTGCAGAATACTCCGGCTGTAGC 3630 30 100.0 33 .............................. AATCAAAGATGCTTAAAAAGCATATTGCAGATG 3567 30 100.0 41 .............................. AAATTTAATACTTGGCAAGACCAGCAAGGAAATACTCGCTC 3496 30 100.0 37 .............................. CTATCCATAGCCCCACCCCTTGATATTTTTTTAGCAC 3429 30 100.0 33 .............................. AAAAACTCTATTCCTTCATCTAATTCTTCATCT 3366 30 100.0 37 .............................. TTTCATTTTCAAGCTCATCAGCAAGGTCGTTAAGCTC 3299 30 100.0 34 .............................. GCCGAAGTCGATACTACAATTATGACGCAGTATC 3235 30 100.0 35 .............................. CTTATAGGGTTATCCCTTACTTCAAAAAATCCGTT 3170 30 100.0 34 .............................. ACAATTTGGGCGAAGATACTTAATATCTCTTTTT 3106 30 100.0 34 .............................. TAACAGACAAAAAAGATAACAAAAGCGTGGTGCC 3042 30 100.0 33 .............................. TAAAGCCGTGCAAAGATATGGAGCATATAAGAG 2979 30 100.0 35 .............................. CCGTTGATATGGCTTAGTATAGGCTTCCCATTAAG 2914 30 100.0 39 .............................. AAATCTTGATAGCCCCCTTGTGATATTTCTAAAATATCG 2845 30 100.0 34 .............................. ATGGCAAAATATACTCATATGATGAACCGCCATA 2781 30 100.0 34 .............................. CAAAAACTAGACTTGAAAGCTCAAAAAGGGCAAG 2717 30 100.0 34 .............................. ATGGATTCAAGCTCTTTAAGCTCCTCGGATAATA 2653 30 100.0 38 .............................. TTCGAGGAACTAGAAGCAGATAGCGAGTTTTAAAAGAG 2585 30 100.0 34 .............................. TGCTTAGCATATGGGCTTTATGTATTTTTGGGGC 2521 30 100.0 35 .............................. GATAGCAGTGAGAACCTTTTGAACTATGTGGAGCC 2456 30 100.0 35 .............................. TAGACATAGAAGTAAAAAGAGACGACGAAGCAATT 2391 30 100.0 36 .............................. TCTAGCTTAAAAAATGAAAAAGAAAAGGAGGTTAGA 2325 30 100.0 38 .............................. CTTGCGAAGTTATAGGTAATATTTACGAGAACGAGGAG 2257 30 100.0 35 .............................. GAGTATTTTTATATTTCAAATTCATTTGGGGCTAG 2192 30 100.0 38 .............................. GCGTTTGATAGTTTAGAGATGGAATATTATGATAAACT 2124 30 100.0 34 .............................. TCGACGTAGAAGTAAAAAGAGATGAAGTAGCGAT 2060 30 100.0 35 .............................. TCTTTTTCTTGAAAATATCAAACATTTATCCCACC 1995 30 100.0 35 .............................. AGAATAAAGAGTTTAAAGAGCAAACGCCTAGTATG 1930 30 100.0 38 .............................. TACATACTAGCTCCCATTTCTTTTATTTTAGAAAAAGG 1862 30 100.0 35 .............................. GTATCTACCATCGAGATGCCTAGCCTTTGCATAAA 1797 30 100.0 35 .............................. TTACGACAGATTGGCTAGAGATTACGATAGATACG 1732 30 100.0 33 .............................. TTTTTGATAAATTTGTATAAAGCCCTTTAAATA 1669 30 100.0 37 .............................. AGGTAGATAAGATAGCACTTGTGAATTACGAAAAAGC 1602 30 100.0 38 .............................. TCTCTTTTTGTGCAAGTAGGCTCATTTTTGATACTAGC 1534 30 100.0 34 .............................. AACTCAAAAGCTCCAAAGAAAGTAAAAGAGAAAT 1470 30 100.0 36 .............................. ATGAAGATAATTGGGTTCATACAATGCTTCCAAACT 1404 30 100.0 34 .............................. GTCTCATAGCCGTTAAATCTGTTTTGTTGCTCAG 1340 30 100.0 35 .............................. ATCAAGTAGAAAGGATAAGTGCGGAAGTTGGCTTT 1275 30 100.0 38 .............................. TGACAAGCTAATAGCTAAAAATCCCAAACTAGCCATAT 1207 30 100.0 34 .............................. TAGTAGGACAAAGCTTAGAAACTACTTGCGAAGT 1143 30 100.0 38 .............................. TTAATGAGTGCTTAAGTAGCATTTATGAATTAAAAAAT 1075 30 100.0 37 .............................. CGATAATGAGAGGTGGGATTTAAGCTATGAACCTATT 1008 30 100.0 35 .............................. ATTTGTCCATATTTATGATTAAAAATGGCTTTTTG 943 30 100.0 34 .............................. AGATATAGCGTTCTAGCTCATCTCTATTTATAGA 879 29 96.7 35 ......................-....... ATGAACAAAAATTTAAAATTTCAACTGCTTTTTTT 815 30 100.0 38 .............................. TAAGTCCATAATCGTGAAGAGTTAAACCCTCTTTTTCT 747 30 100.0 36 .............................. AACGCATAGAGTGTCCTTTTGTAAATAAGGGCAAAT 681 30 100.0 36 .............................. AACGCATAGAGTGTCCTTTTGTAAATAAGGGCAAAT 615 30 100.0 35 .............................. TCCACTCATGAAGCGAGTTTGTAGCTCCTATAAAA 550 30 100.0 36 .............................. CTTTTCCAGTTTGTAGTTGCTTGTTTAAATATGTCG 484 30 100.0 35 .............................. CCATATTGGAGTTATTTGAAGGGATTTACAAAAGC 419 30 100.0 36 .............................. GACTAGGTCTCTCTCTTACAAATTCTATACTATTAT 353 30 100.0 35 .............................. TATCTTGCTTCATATAGTTTATCTAATTCTTTTCG 288 30 100.0 36 .............................. TTTTCAATAGTGAAACATTTGAACAAGTTTTCGTAA 222 30 100.0 36 .............................. TAGGTGGGGCCTTAGGGAATGGGATAGGTTCTTATA 156 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 138 30 100.0 36 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TTCTGCTCAGACAAGGGGTGATAAAACTGCATTTAACATACTTAAATATGCAAAAAACGACCAAAATATAGCCATAACTCAAAATGAATACTGGATAAAAAAGCATAGAAAGATAGATGAAAAAGTATTTTTAAGAAAAGATGTAAAATCCAAAGCAAACTGCGTGGCTTGTCATAAAAAAATAGAAAACGGTATAATCGGCTTGATAGACTATGAAAAAATAAAATAATTTACAAGCGTTTAGCGAGTTTAAAATTTGCCTTATAGCTATTTTTATTTTGATTTAATATGGTTAAGTTAGATTTATTTATGGATCAACCTTTGCCTAAATACTTAAAAAAAATTGCTTTAAATAACTTGATAAAGCTATATTTAAGATTTATAAAATAGCTTAAATGCTTTATTTGATGATTTTATAAATACTATATTAAGCCATTTTTTAGTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGCC # Right flank : CGGAAATCTTCACATATTTTGTGCGTAAATTAAAGGGGGATTAGCCTCCTTTTTAATATTAAAATTAATATAAAATATAGGTGCTTAATATAAGCTTAATATAGATAATAAAATTAAAGGATAGTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //