Array 1 105-345 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVL01000023.1 Veillonella sp. VA139 contig_0023, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 105 35 100.0 36 ................................... GAGATGCAAAATTAACTCCTGAGAATGCAATTAAAG 176 35 100.0 33 ................................... GGCTTGATGGAATATTCCTATGAATTTGAAGAG 244 35 100.0 32 ................................... TATATTTTAAATATAAAAATAAAAAAAATTAA 311 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 4 35 100.0 34 GTTTCAGTCCCCGCAATGGGGAAGTAATTCTAAAG # Left flank : ATTTTTTTTATTTAAAATTAGTAAAATTATTAATTTTCTTGACACCCATTCGGGATGTACTTATTATTATTTGATACTCTCTTATGTATTATCTTATTTATAAAG # Right flank : ATAATAAAAAAAACAAGAAACTTTGATAATCAAAGTATCAGTCCCCGCAAAGGGGAAGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGCAATGGGGAAGTAATTCTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 35339-34610 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVL01000022.1 Veillonella sp. VA139 contig_0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================================== ================== 35338 35 100.0 33 ................................... TTAAATCATTTTCTAATTTGTCACCATCTCCTT 35270 35 100.0 35 ................................... AGAAGTAGATGTTGCCGTAAGTGAATCTGTAGAGA 35200 35 100.0 33 ................................... TTTCTTTTTAAAATATTCGATAAGATCTTCAAC 35132 35 100.0 34 ................................... GCAATAAAAATCCTCGGACCTGAGTAAGTCCTTA 35063 35 100.0 34 ................................... ATAGCAACTGGTTGGAAAGGATAATAGACTCGTA 34994 35 85.7 51 .............................ATGC.A ATTACATCATCCTTTCCCCTGAGTTCATATATCTGTGCGTAAATAGCACAC 34908 35 68.6 52 .G.GCT.T....G................AAGC.A AATTAGATTAGCCTATTCCCAAGGTACACATATCTATGCATAAATAGTGCAC A [34892] 34820 35 74.3 50 .G.GCT.T....G.................AG..A TAACTTTAGCCTCTTGCACAAGACCAGATATCTGTGCGTAAATAGTGCAC C,A [34789,34804] 34733 35 74.3 49 .GCACT.T....G..................G..A TACCGATAGCCTTTTCGCAAGAACAGATATCTGTGCGTAAATAGTGCAC GC,A [34699,34717] 34646 35 74.3 0 .GCACT.T....G..................G..A | T,A [34613,34630] ========== ====== ====== ====== =================================== ==================================================== ================== 10 35 87.7 41 CTTTAGAATTACTTCCCCATTGCGGGGACTGAAAC # Left flank : CCCCAACATTTTTTTTTTCAAGCTCACCACTTCATACGATATTAATTCTAGTCTCTTGGGCTCTGAGATTTGTATAATATACAGATCCTAATGCGCCAATCAAC # Right flank : ATACCGATAGCCTTTTGCCAAAACCAGATATCCTTGCGTAAATGGTACACCGTACCATTTGCGTCCAACCATTGCTATTCTTTCGTTATGATTTAAATAATTTAAAAACAAAAAGAGCACTGTCTCTTCCTTTATAAACAATATAAAATACTGTTTATGTAGGAAGAGCCAGCGCTCTTATTTTTTTTGTTTCTCTATGCTAGTTTCGCCATATCAAACTCATACTCTATTCTTATGTATATAAATTAAAGTACTCTCTCACTGTATCTAAGTAATCTAATACGTTGTTAGTCTCTTCGTTTGCCATACACAATAAAATATCTACACTAATTCCTTCAGGTACGAATTCATTTGACTCGTATGCGAATATATAGCAAAAGACATCTACACTTTCATTATGTATAACAATTCCTGTTTTACACTTTGCATTGGCAGCTTGTAAAATATTCGCTATATCATTAGAGGTTAAATGCCTAGTATTTACCGGATATAGGGTATTA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGAATTACTTCCCCATTGCGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 986-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVL01000028.1 Veillonella sp. VA139 contig_0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 985 35 100.0 34 ................................... CAACTGTTTTATTGTTGACCTCTATAGCTATCTT 916 35 100.0 37 ................................... TTATATGCGTGCAATGAGGTTCTGTCGTAATATTCGA 844 35 100.0 35 ................................... GCTACATTAGATGCCTCATGTACTTCATTCTCATC 774 35 100.0 35 ................................... TAATAGTCAATGAGTTAAAGAAAATTCCTTCTTGA 704 35 100.0 34 ................................... GGCAGTTTAATGACATGCCCAGGTCTTTAATTAA 635 35 100.0 34 ................................... TAAGACATGCCCAGGTCTTAGCTAGGAGACTAGA 566 35 100.0 34 ................................... GCACTGACGGCTTCTTTTTGCTCGGCTTTTAAGG 497 35 100.0 35 ................................... ATTAAATTTCTCTTTTATAAAACCTGGGCTATCTT 427 35 100.0 34 ................................... GCAATTTCTTTTGCTGTAAGATAATGAAATTTAG 358 35 100.0 37 ................................... GTAGAATGTATAGCCAGAGACATCTATATCTTTGAAT 286 35 97.1 34 A.................................. GTCCTCATAGTAGATATTCAACTGGGATAGATAC 217 35 100.0 34 ................................... GGAAATCCTCAACAGATGCGATAGGCACTTTATA 148 35 100.0 34 ................................... GTATAAGAATAGCGCATTATCGCCATATTCTTGA 79 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 14 35 99.8 35 CTTTAGAATTACTTCCCCATTGCGGGGACTGAAAC # Left flank : GGTAACTTTTGCACTATTTCCTCACCCAACTCTACGACGAAATATCCCCCACTCTTACGAATCTTAGCAGCTGGTTCTGTAATATATAGCGATGCCATGAATAGCCTCCTTTCTATTTGCTATATACCTTTCTTCAGAAATGACTTCTTCTGAAGTATCTATCATCAGTATACTCTTTTTTATATTTGTGCCATTATAAAAGTCCCGATAGTTAAGTTGATCAACCTTCTTGTGAAAAAACAAAAAATCCCTTGAAAGATTTCCCAAAGTATGATATAGTCCTACATAGATAAGATTTGCGAACTATTTTATAAAAACATTTATAAAGTGAGCTATTTTACGAAAAAATTCTAAAGAAAATCAAAATCTCAGCCGACCCAGTGGCCATGCGGTCTCAGAGCTGCTTTTGAAATGTAGTGCTAATGCTTTTTTTCAAAGTTGCGATCTCAGTCGGAAAGTGCATTTTGAGAGGCTTGGTTATGCGGTTTCTAAGGGGTGGC # Right flank : CTGAACTGTACGAGGAGTCTTCCCATAATTCTGGAACTTTAGAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGAATTACTTCCCCATTGCGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 66884-67522 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVL01000010.1 Veillonella sp. VA139 contig_0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 66884 34 85.7 43 AA..-.......G..T................... TGTTTTCTGAACGAATTGTTGATGAAAGAGTGCAACATTTATG T [66907] 66962 35 91.4 40 ............G..T.........A......... TATCCAGAATTGCCTACATTAGATGACACTAGGCATATAC 67037 35 91.4 39 ............G..T.........A......... GCGTATACCTAAAATAAAGCAATATAACGATGCTCAAGA 67111 35 91.4 41 ............G..T.........A......... AAAGTCACCACAGGCAAATTAACATCCGACCTTGAAACCGC 67187 34 88.6 39 C.......-...G.....................T TTGATAAGTTATTATAATTAATTTCTACAAGGAGGAAAC C [67218] 67261 35 94.3 43 ............G.....A................ TCTAAGAATTATGTTAGATAATAAAATTGCGCTATTGGCTTAA 67339 35 100.0 41 ................................... TAGGACATTCTCACATCTATGTGAAGAAGACATAGTATAAT 67415 35 100.0 38 ................................... TGAACGAGAAACAGTTAAACGAAATCATTTAGCTATTA 67488 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 9 35 93.6 41 GTTTCCGTCCCCATACTGGGGATTATTTTTTTATC # Left flank : TTCCTTTCATAGCGTCTCAATATAGTCAGCTGATTATTTATTTTAGCATTGATTAGCCTTTTGCTAAGTGCTAAACAGAAATCTTTATCGCCCCTTATAGTAAATTGTCTCTGATGCTTATGAATATCTACAGTATTGGTATTAATTAAAGTACCGAAATACTTTCCATATCCTGATAGCTAGGTCACTGGAATACCATTAGATATAAAATCAGTCAATAATGATGATGAAATATGAACCGAGTCAAATACTGTTACATCATCAATAGAATCAAATGGCACTTCAAATAACACCTCATGATTCCTACCAACAATAACATGTCCACCTTTTCGTTTAATAAATGAACTTGATTCTGTCACATATAAAGTCGTCATACAAATGCCTCCCTTATAATACATAACTATTGTTATAATGCACTCCGATTCCATATTATAAGACGTATATAATGCGGTGCATTGTTTACGCATAGAGCTAAGTATAATAATCTTAAGTTTTGTTGA # Right flank : ACTACCCTCTATAGTTATGATACCTAGTGCGTTTAAACCACGATTATCGGCGGAGTCTTCACAAAGATAACCCTAACTTCAATCAGAATCGCAAAAACTGTTGTGCAAGCCTATCCTTATCATATCGGCGGAGATTTATATCTAACACAAGAATACCATATCTATTAGATAAATTGCAAATTTCAAGCAATAAAAAAGCCTCACGTCAGATTTGCATATCTATCCTTACGGATGTGAGGGGTTTGTTTCAGTTACATAATAGACCTATCCTAACACTCTGTCAAGCATGATTTCATGCCTTCAGACAGTGTAAAATATTTTGTGTAAACATGTTTAGTTAGTATTGAAAAAAGAACTGAACTTCTTTAAGATTTAAGTGTCTAATAAAAATCACAGAAAGAAGGTTCAGTTCTTATGACTAATACTAACACAAATTTATTAAATGCACTACCAGTAAAT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCATACTGGGGATTATTTTTTTATC # Alternate repeat : GTTTCCGTCCCCGTATTGGGGATTAATTTTTTATC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //