Array 1 1706806-1702985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045070.1 Vibrio harveyi strain WXL538 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1706805 29 100.0 33 ............................. CCACGGAAACTCTTTAGCCATAGCAGCTACAGC 1706743 29 100.0 32 ............................. CTCAAATTACTGACATGATTAATCAGTGGCTA 1706682 29 100.0 32 ............................. TCAGTAGAGTTACTTTATCCATTCTCGGTCAA 1706621 29 100.0 32 ............................. CTTTGTGATCAAGAAGCTCAGCGTAATCGCAC 1706560 29 100.0 32 ............................. ACTGATGTAACTATGGACTGCTTAATTGCAAC 1706499 29 100.0 32 ............................. TGAAGTCTATCGATGGCAAGCAATGGCGTATA 1706438 29 100.0 32 ............................. TCGGTTTCACTGCAGGACCCATATCAAGAAGA 1706377 29 100.0 32 ............................. TGGAATTGCAAATCCAACTGGATTGAATACGA 1706316 29 100.0 32 ............................. CTTTTCAACCTCTTCGATAGCATAAGGAACAG 1706255 29 100.0 32 ............................. ATGCGCCAGAACGTTCACCGGTCCATGAAATA 1706194 29 100.0 32 ............................. CCCCACCAATCGGCAGGGCTCAATATTTACGT 1706133 29 100.0 40 ............................. TTGAATCTAGGCTATTCCCAAAGGTGTCAGCCATGTGCTC 1706064 29 100.0 32 ............................. CAAAAAACAATGATCAAACCTGATTATACTAG 1706003 29 100.0 32 ............................. TGTTTTGAAATCGTGGACTTCTACGAAGACAC 1705942 29 100.0 32 ............................. GTCATAGATAATTTTTAGTTCTTCAGTAATAT 1705881 29 100.0 32 ............................. CTAGTGAGGTTGTCATCATTGACTGTGGTGGT 1705820 29 100.0 32 ............................. CACTATGCAGAAAATGACTGGAGAGTTGAGGA 1705759 29 100.0 32 ............................. AATTCCCAACTCAGTGAAATCAGTCGTATCTA 1705698 29 100.0 32 ............................. CGAAGTTACTTCAAACGACGCTAGGCTTCCAG 1705637 29 100.0 32 ............................. ACGTCGCAGCCATCGAAAACGCGAAAATAAAT 1705576 29 100.0 32 ............................. TTTGGGTGTGGGTTCCTCAGATTGCAAAGTTT 1705515 29 100.0 32 ............................. CATGGTGGTGGATGACAATAATATGAGCGTTG 1705454 29 100.0 32 ............................. CAACAGCGCGGGGTCTTGCTTACGCCTGTTGA 1705393 29 100.0 32 ............................. TAAAATCACTATCTAATTCTTTGTGAATGCCG 1705332 29 100.0 32 ............................. TTAACATTCACCATCGAGCCGTCTGGGATGCC 1705271 29 100.0 32 ............................. CTTGTAATATTGAAATAATAGCCATCAGTCGC 1705210 29 100.0 32 ............................. GGCAATAGTGTCCCTGCATCGATACCAGACGG 1705149 29 100.0 32 ............................. CTGGATTTGTGTCGCGATGTTGGCGCCCACTG 1705088 29 100.0 32 ............................. CCAAGTGGTGAGCGTGTCGAGGACGAAACAAT 1705027 29 100.0 32 ............................. AGATCACACTCATTGATACGACTCCGTTATTT 1704966 29 100.0 32 ............................. CCTTGATAGCCTAGAGGCGATTGACGTCACCA 1704905 29 100.0 32 ............................. CATGGCATTAATGCTGAGGTCGTTTCTGCAAA 1704844 29 100.0 32 ............................. CAAAAGCGCCGCATTTACAGCGTTAAACATGA 1704783 29 100.0 32 ............................. GGCAATCATCTTTAAAAAATTTGAAGATGGGA 1704722 29 100.0 32 ............................. TTTAGCCAGAGCCAAGACGTCGCAGCCATCGA 1704661 29 100.0 32 ............................. TTGGATTTGCTTTTACTGGTGTGGTCTTAGCC 1704600 29 100.0 32 ............................. CTGACCGATCTCATTGCCTCTAGTTGCTGTTG 1704539 29 100.0 32 ............................. GATGGCGGCGGTATTTACACAACCGAAGTTAT 1704478 29 100.0 32 ............................. TTAAAAGATAAACTTCTGACTTCAAAGGATAA 1704417 29 100.0 32 ............................. CTTCGATTTTTCCAGTTAACAAGCCGAGGAAC 1704356 29 100.0 32 ............................. GAACAGCTGCATCTAGTGAGTTGCATGCATCA 1704295 29 100.0 32 ............................. CAGTCCTTGCCGTACAGTCTGAGCTATCAGGT 1704234 29 100.0 32 ............................. GCTTATGTCTTCTTCTGGTTTGGCTTCTTTAT 1704173 29 100.0 32 ............................. GATGTGACCAACCCGATTGAACGAATTAAGGG 1704112 29 100.0 32 ............................. CTTCTCGTTTTCTTTGAGTGTGCAGTAACCTT 1704051 29 100.0 33 ............................. TTAGTAAGCCGTTCGCAGATTGGACTAAAAAGC 1703989 29 100.0 32 ............................. CAATGTCTAATATAACTGTACACCTGTCTCTG 1703928 29 100.0 32 ............................. AATTCGCACAGTGCCATTTCTTCGCAGGGATC 1703867 29 100.0 32 ............................. GACATAACGCGAGCATCACCAGGAAGTGACGT 1703806 29 100.0 32 ............................. TGCAGGGCGTGCCAATGAAGTTAATTTGGATA 1703745 29 100.0 32 ............................. CTATTGCTGATACTGAGTATGTTAATTCTAGT 1703684 29 100.0 32 ............................. GTGTAGGTTATGTTTCAAAATATGATTGCTGA 1703623 29 100.0 32 ............................. GCGTTAAGACACGGTTTATTAAAACTGTACAG 1703562 29 100.0 32 ............................. GTTCATATTGCCTTTACCGTTGTTATACACAA 1703501 29 100.0 32 ............................. CGAGATTGAAGACTGGCTGGCGTTCAATTTCT 1703440 29 100.0 32 ............................. TACGACCTTTTCACGGATGGAATTGTCGGCAA 1703379 29 100.0 32 ............................. GGCAATCGTTCAATGATGAACAATGCGCCATA 1703318 29 100.0 32 ............................. GTTTGTTTAACTCTGATGCGGTCACAGTGGTG 1703257 29 100.0 32 ............................. TTTCTCTGCAGACTCTTCGTAATGCTCTTTTG 1703196 29 96.6 32 ........T.................... GCTCTGGAGCACGAGTTTCGAACTCGGATGAG 1703135 29 100.0 32 ............................. TGCCGAGCTATAAAAGCGGCTGATAAGTGGAG 1703074 29 100.0 32 ............................. ATCAGCGACGAAACGCTGATTAAAATTTTGCT 1703013 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ======================================== ================== 63 29 99.9 32 GTGTTCTCCGTATCCACGGAGATGAACCG # Left flank : ACTAATTGAAGAAGTATTAAGCGCTGGCGATATTACGCCACCAGAGCCTTATGTGGATGCCCAGCCTCCGGCTATACCTGAGCCTATCGCGGTCGGCGATTTTGGCCATCGGAGTAAATAACATTATGAGTATGTTAGTGATCGTGACAGAAGCGGTTCCTCCTCGATTGCGAGGAAGGCTTGCTGTATGGCTATTAGAGATCAGAGCTGGCGTATATGTGGGGGATGTATCACGTAAAATCCGTGAAATGATTTGGGAACAAATTAATGTATTAGCCGATGACGGCAATGTTGTGATGGCGTGGGGGACAAATACCGAATCGGGATTTGATTTTCAGACGTACGGAAAAAATCGCCGAGAACCTATCGATTTAGATGGTTTAAGGTTGGTGAAATTTCAACCACAATAATAATTGATTGGTGTCGGTTAGCTCTTTAATAATGTTGGTAGAATAAAGCATGTTGATTTTTTTATTATAAATCAATAGTATATCTTTAGA # Right flank : ATGCAAAATGACATGGAAGTGCGAGGCTGTGCGTGTTGGTCGTCCCCCCGGGCATCACCAAGACTAAGACAAAAACGCACATGAACTTAATTGTTTTAAATGAGAGATAATATGATTACTTAGTAGATGTGATATTTTAAAGTTGTTGTACCAAAGGTTTCTACATTCGCGGACGATAACATGTACATCGCATTAATAAATAGTTAAATTTAAAAAGTTTTTGTTGGCTCCATTCTTTGATTGCTACTTCAAAGGGTCTTAGCATGTCGATGGCAATACGGCAAGTGATACCCCTGACGGGACGTGAGCCAATATGCTCAAAGACGTACTTCTCTAGAGACTTCCAAATTCTCTTTGCATGGAGTTCCCTAAAGGTTTTGCTCTTTTTTTGAACAACTCCGTTGAGATGGCTAGAAAGCTATCATTATGAGTCCTCAAGTTTTCCATTCGACTTTTTTCTTTAGCTTGCTTGGGGTCAATTCCCGTTGCGAGTTGTTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCGTATCCACGGAGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //