Array 1 7708251-7707917 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023698.1 Streptomyces viridifaciens strain ATCC 11989 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7708250 29 100.0 32 ............................. TTCGAGACTTCGTCGATGGCCAGCAGGATGAG 7708189 29 96.6 32 ............................C GAGCATCGCGGCGTGCCGGACCGCCCAGCGCA 7708128 29 100.0 32 ............................. CTCTACTCGCTCTCGCAGATCGACGGCGACGA 7708067 29 100.0 32 ............................. ATCCCTTCCCAGAGACGGAGTTGGGTCGTTGG 7708006 29 100.0 32 ............................. TTGGGCCGCCATGGGGTCCAGGTGGTCACGGT 7707945 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 CTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : GACCTGGTTGTCCGGACAACGCAGCAACGAGATTGCCCGATTGAGGGTGGGCTGCATCCGTTGGCAGCACGACGGCACCCCATCACCGGTGACTCCCAGCAGGTCCTGGCCCGCGACACCGTCTGTCTCCTCGACGTCCCGCCCCACAAGACCGGCACCGCCTTCACCAGGCCGGTCGACCCGATCCTCTGCCAGGCCGTCGATGCCTGGCAGGCCGTCCGCCCGGATCAGCCGAAGTTCACCGACCCGCCGCACCGGCGAGCGCGTCGACCTGCTGTTCACCATCCGGGCCTGCCGCGTCCGCTGCGCGGAGGTCGTCCCGCGCCTGCGGGGTCCCCTGTCGGTCCTCCCCACCAGCACGGGGCCGCCGCGAACTCGTCAAACACCGACCATGCGCCGTGACACGATGAGAACCCGCACCTTGACACCACAACAGCACACCACGTCGCGCAACCAGTCAAGAAACAGCAAAGCCGCTACTGCACCGCAGGTCAGAAAGC # Right flank : CGCCGACTCGGACGGAAACGCTCCCGAAGCCCCTCCTCCCCGCACCTTGAGTTCTAGGGATCGTTGCAACGCCCCAGCTGGGGAGTGCAATGACCTTCGATATCCGCGAGGACCGGCGGCCGCAGGGGCCCAGGAAGCTCCGTGCCGAGCGGGAGGAATACTTCCGGCTCGTGCAACAGGGCTACAGCAGCAAAGAGGCGTCCCGGCTGGTGGGCGTTCACCCGCGTACGGGACGTGAGTGGCGCAACGGCCGGACGGACCCGAAGAGGTTCAGGGCGCCCGCTCGACCCGAGCGGGCGCCCTCCCGTGCGTCCGGCGGGTCCCGGTATCTGCGTGAGGACGAGCGCATCCACATCGCCGACCGGCTGCGTGAGAAGGCCACCGTGCGCGCGATCGCGGCCGAGCTGGGTCGCAGTCCGTCCACGGTCTGAAGTTCCACCCTGTGGTTGGACACTCTCCGTCTACGCTGCGAGGGTGTGACCTTGCCGGTGCCGCTGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7716204-7714997 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023698.1 Streptomyces viridifaciens strain ATCC 11989 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================== ================== 7716203 29 86.2 46 ...A.......A.TC.............. GACAGCCGGGACAGCACTGACACCAAGTCCGCCTCCTCCCCGCACC 7716128 28 72.4 2 GC.G.........CT......-..CC... TC Deletion [7716099] 7716098 28 62.1 133 GG...T...-.A.CA..AC...C.C.... CGGACTTGTCAAACGCCGACCATGCGCTGCGTGACACGATAAGAACTCGCACCTTGACACCCCAACAGCACACCAAGTCGCGCAGACCAGTCGAGAAACAGCAAAGCCGCTGCTGCGCCGCAGGTCAGAAAGC 7715937 29 100.0 32 ............................. ACGGCGGAGGGCTTCGGCCACCACCTCGCGTA 7715876 29 100.0 32 ............................. CCGCGCTCGTCGCCCTCGACCACCTGTACGGC 7715815 29 100.0 32 ............................. GTGGTGCCGTCCTCGGCGGTCTTGGTAACCGT 7715754 29 100.0 90 ............................. CCCAGGTCTTCGACTGGCTGGTGGAGGACGTAGTCCTCCCCGCACCCGGGGTCAGGCGTCCTTCCGGCTCCGGTGAGGTGCGAACTCACC 7715635 29 79.3 32 GCT........A.CC.............. GACATGACCGAAAAGGAGCTGATCCGGGCCAC 7715574 29 82.8 32 G.T........A.CC.............. CGGCCGGGGGGCAGCAGGGGCAGCAGCACGCT 7715513 29 79.3 32 G......T...A.CC...A.......... CCGGAGCGGGTGGCCGCCGTCGCGGTGGACGT 7715452 29 79.3 32 G..........A.CT..A....A...... CTGTCGTCGCCCAGGTCCCGCAGCGTCTTGGC 7715391 29 82.8 32 .....T..T..A.CT.............. TCCCACTGCGTCGACCCGCAGTCCGACGGACG 7715330 29 89.7 31 ...........A.CC.............. AGCGGCCCGGACCGGAGTTGGTGCAGATGTA 7715270 29 82.8 32 G.......T..A.CC.............. TTCTGCTGGACGTCGGCCCAGCCCTCGATGCT 7715209 29 86.2 32 G..........A.CC.............. GGGTGGCCGCCGTGGCCGCCTCGTATCGCGAG 7715148 29 82.8 32 G..........A.CC..A........... CGGTCACCCGGGTCCTACAGGCCGGCCAGTAC 7715087 29 79.3 32 G.......T..A.CT.......G...... CCGGTCGACGGAAGCTCGTACGTCGGGGCGTC C [7715070] 7715025 29 89.7 0 G........A...A............... | ========== ====== ====== ====== ============================= ===================================================================================================================================== ================== 18 29 85.3 40 CTCCTCCCCGCGCGGGCGGGGGTCAGCCG # Left flank : GTGGCGGCGAAGATCCGCCGCCAGCTCGACCGCCGCGTCGATGAGCTCGGTTGCATCAGCGGGTCCGGAAACCTCGACCTGCCAGGCTCCCCCAACTGGTACATGCCTGACCTTGCGGTCATCCCCGAAGACCTGGCCAAAGGCGCGGGCGCTCTCACCCCCGACCAGACCCTCCTGGTCGTCGAGGTCACCTCCGAGTCCAATGGCGACACCGACCGTGTCACCAAGCGCAAGCGCTACGCCCAGTACGGCGCCCCGCTCTACTTGCTCGCCGACCGGCAGAACCGCACCTGCACCCTGTTCTCCGAGCCGCACGACCTCGGCTACGCCGTCATCGACGGTCCCCACCCGTTCGGGACCGCGCTCCGGCTGCCGGAGCCGTTCAATCTGACCCTGGACACCACCGCTTTCTGACCACACGAGGCCAGCCCGAGCACACCAAGCCCAACCGGCCAGTCAAGAAAACAGCAAAGCCGCTGCTGCGCCGCAGGCCAGAAAGC # Right flank : GTGCCGATCGCGCCGAGGTAGGACAGCGGGCCGTCCTCCTGTCGGCAACGGCCCAATTTGAGGCCGGTCTCAACGGTTCAATCGTCGGCCATCGTGCGCTCTCGCTGGCTCAGTCGTTGTCGGCGGCGGTGGGGACGCGGCCGAGTTCGCGGCCCCGCATGCGGTAGGACTCGCCCTTGAGGGAGTGGACCTCGGCGTGGTGGACGAGTCGGTCGATCATCGCGGCGGCGACGGTCTCGTCGCCGAACGTCTCTCCCCAGCGTCCGAAGGGCTTGTTCGAGGTGACGATTACGCTCGCCCGTTCGTATCTGTTCGAGATCAGCTGGAAGAACAGGTTCGCCGCCTCGGCCTCAAACGGGATATACCCCACCTCGTCGATCACGATCAGCGGGTAGCGGCCGAGCTTGACCAGCTCATCCTGGAGCCGGCCGGTGTGATGGGCGGCGGCCAGGCGGTCGACCCACTGGGCGGCGGTGGCGAACGCGACCCGGTGGCCGGCC # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.26, 5:0, 6:0.25, 7:-0.95, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCGGGCGGGGGTCAGCCG # Alternate repeat : CTCCCCGCGCGGGCGGGGGTCAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 7719798-7716985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023698.1 Streptomyces viridifaciens strain ATCC 11989 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 7719797 29 89.7 32 C..........A..T.............. TGGCCGAAGCCTCCGGCAGGTGCGCTCGAAGG 7719736 29 89.7 32 C..........A..T.............. TCGGTGGCGACGCCGAGCATGTGCTTGAACTC 7719675 29 100.0 33 ............................. GAGCGCGAGGACGCCCTCGGCTGCGGGCGCCCA 7719613 29 96.6 32 ...........A................. GTTCTGTCCATCGGTTCCGCGATCGTGACCGT 7719552 29 100.0 32 ............................. GGCACGATCTCCCAGTCGTCCGGCGGGGGGAT G [7719535] 7719490 29 100.0 32 ............................. AGGCGCTAGGAATGCGCCAGGAGGTCATGCCC 7719429 29 100.0 32 ............................. CCCCCGGGACCGGCCCCAACTCGTGATCCACG 7719368 29 93.1 23 ..........GA................. GCGAGCCGGCGGACCGTGCCGTA Deletion [7719317] 7719316 29 75.9 32 CCA.CT........T.T............ CTGATGAACAGGACTACGGTCTTGGCGTCCGT 7719255 29 89.7 30 ..............TA.C........... GGGTTCCACCGCCTGGGCCGTTGTGCTGGA 7719196 27 89.7 32 ........--....T.............. GTCGCGCCGGTCATGTCCCGCAGGGGCTTGGC 7719137 28 86.2 32 ...........A.T...-A.......... ATCGCTCGGAACATCGTCGTGTTCTCCATGCG 7719077 29 93.1 32 C..........A................. CGCGCTCTGACCTGCGTAAACGCCCGACGGCG 7719016 29 100.0 32 ............................. GATCACCTCCAGCTCCCGGGCCTGGTCGGCCG 7718955 29 100.0 32 ............................. GTCTTGCTGTGGATGTAGTCCACGATCTCGTT 7718894 29 96.6 32 ..................A.......... AGGGACAGGCCCAGGCACTGACCACCATGGCC 7718833 29 100.0 32 ............................. GGGATCGAGTGCGCCGAGCACCGGGGCGCCGA 7718772 29 96.6 35 C............................ TGGCTCCGCTCTGGCGGCCTCGCCCCCCCCCGAAA 7718708 29 93.1 24 ...........A..T.............. CCGCTCGGCCGCGGACCGCCTGAA Deletion [7718656] 7718655 29 86.2 32 ...........A.AT........A..... TACGCGGTGAACTCCGAGGCCTGGCGGCATGA 7718594 29 96.6 32 ...........A................. CCGATACGGCACCAGCGGCTGGTGAGGCTGCC 7718533 29 96.6 32 ...........A................. GCGCCGCAGACGTAGACGCACTCCTCGGGATC 7718472 29 93.1 32 ...........A........C........ CCGAGGGTGGTGCGCGCCCACCACAGGTTGGA 7718411 29 93.1 32 ...........A..T.............. CTGATCACCACGAACGTGGGCCGGAGCCGGAC 7718350 29 96.6 32 ...........A................. CCCTTCTTCGTCCGCTTGGCCGGGTCAACCTT 7718289 29 86.2 32 ...T.......A..G............T. GTGACGTCGATCAGCTCGCCGCATCCGGGACG 7718228 29 89.7 32 ......T...AA................. CGCCCGGCCTTACCGTCGTCGGGCCACTGGGG 7718167 29 100.0 31 ............................. CCGGGGACACCACGCCCTTCGGCCACACATC 7718107 29 96.6 32 ...........A................. GTTGCAGAGATCCGCGACCTGATCGAGCGTGT 7718046 29 96.6 32 ................T............ GGCCTGCTCGCCCTGCAGACGACGCCGATCAC 7717985 29 100.0 32 ............................. AAGGGCGCAGGCTCGGCCGGCGGCGGGTCCAC 7717924 29 100.0 32 ............................. TACCTGGGGTGGCAGCCCGATGGGACATTCGT 7717863 29 100.0 32 ............................. TCCTCCTCGGATCGGAGCGGTGCGTCGGGCAC 7717802 29 100.0 32 ............................. GCGATGGTGGAGGTGGGGACGCCGCCGGACGG 7717741 29 100.0 32 ............................. TTCAGCCCGGTGCAGCCGACCGAGCGTCAATT 7717680 29 96.6 32 ..........T.................. GGGCAGGAACACCTGATCCGGTGGAAGCTGCC 7717619 29 69.0 28 ........T.......G.TCA.C.GA..C GGCTGCACAACGTGCCGATTGAGTTCGA 7717562 29 96.6 32 ........T.................... CCACCGCCGCGAAGGTGAAGGCCCCGGACGGG 7717501 29 100.0 32 ............................. TACCCGGGCGAGATGGCCCGGGTCAAGATCAG 7717440 29 93.1 32 .............AG.............. GTATCCCCCGGAAACCTTGATGTCCCGCCAAG 7717379 29 86.2 32 C........A.A..T.............. TCGCCGGTGCGGTGTGAGTGGACTGCTAGGAC 7717318 29 82.8 32 C....G....TA..T.............. CGGCCACCCGGGGCCAAGGCGCGCGCACGTGC T [7717297] 7717256 29 89.7 32 C..........A..T.............. CTGGCCGAGGTGCTGTCGAAACGGACGCCGTG 7717195 29 96.6 32 A............................ GCCAGCGAGTGGGTCGAGGAGATCACCTACCA 7717134 29 100.0 31 ............................. GTCCGCCGGGCGGACGTCGAGGAGCGCACCC 7717074 29 86.2 32 .GT.CT....................... CCGGTAGACGGAAGCTCGTACGTCGGGGCGTC 7717013 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 47 29 94.0 32 GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Left flank : ACCTGGTTATCCGGACAACGCAGCAACGAGATTGCCCGATTGAGGGTGGGCCTGCACCCGTTGCAGCACGACGGCACCCCCATCACCGGTGACTCCCAGCAGATCCTGGCCCGCGAGACCGTCTGTCTCCTCGACATCCCACCCCACAAGACCGGCACCGCCTTCACCAAACCAGTCGACCCGATCCTCTGCCAGGCCGTCGATGCCTGGCAGGCCGTCCGCCCGGATCAGCCGAAGTTCACCGACCGCCGCACCGGCGAGCGCGTCGACCTGCTGTTCACCCTCCGGGCCTGCCGCGTCCGCTGCGCGGAGGTCGTCCCGCGCCTGCGGGGTCCCCCGTCGGCCCTCCCCACCAGCACGGGCCCGCCGCGAACTCGTCAAACACCGACCATGCGCCGTGACACGATGAGAACCCGCACCTTGACACCACAACAGCACACCACGTCGCGCAACCAGTCAAGAAACAGCAAAGCCGCTGCTTGCGCCGCAGGTCAGAAAGC # Right flank : GGCATGACCGCTCGGCATCACGCCCGCCCCTCTTCCTCGGAGGCACAGGGATCATTCCCCGCCAGACTCCCGACCAGCTACGGTAGGAGCCGTGGGTGTCCGGTCGAACACACCACAGCCAGGCCGGAGGAGGCGAACCGTTGAGCGCGCAGCCGATCGCGTACGCGGACGTGAATCACGAGGCCGCGTTGAAATACGCCGTGCAGCTCATCGATCACCGGTGGGCTCAGGTCATCGAGGGGCGGATCGTCCTGGTGTCACCCACGTGGGACCACGAGAACGTGGCGGCGAAGATCCGCCGCCAGCTCGACCGCCGCGTCGATGAGCTCGGTTGCATCAGCGGGTCCGGAAACCTCGACCTGCCAGGCTCCCCCAACTGGTACATGCCTGACCTTGCGGTCATCCCCGAAGACCTGGCCAAAGGCGCGGGCGCTCTCACCCCCGACCAGACCCTCCTGGTCGTCGAGGTCACCTCCGAGTCCAATGGCGACACCGACCGT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [28-44] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 7723510-7721620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023698.1 Streptomyces viridifaciens strain ATCC 11989 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================== ================== 7723509 28 69.0 21 C.A.....A.T.A.AC.....-.G..... GAGGTTCCGAGCTCCGAACCG A [7723497] Deletion [7723461] 7723459 29 82.8 32 C.A.........T.A......A....... TTCGGCCAGGCCGAGGACGACCGCGCTGTTAC 7723398 28 86.2 32 C.....G....A.........-....... CAATCTCCAGCACACCGACCCGTGGCCGGACG 7723338 29 82.8 32 C.....G....A..T.............C AGCAGCGCCGCGAGGGGGCGCCCGTCCATGGC 7723277 29 93.1 32 T..........A................. GCGGTTTCCGGCGGGGTTTCTTCCGCCTCCAG 7723216 29 100.0 32 ............................. GGCGGGCCCAGCGTGAACCTCACCAGCAGGGG 7723155 28 79.3 32 .......TG....AG.....T-....... TGGTAGTGGCCGACGACCAGGCCACGGCGCCG 7723095 28 96.6 32 ........-.................... CCGGCCGCCTGGCCGTCCCACGCGAAGTACAC 7723035 28 93.1 32 ........T............-....... GAGCTGCCGAGCGTGCCCGGTGTGCCGGCGGA 7722975 29 93.1 32 ...T.......C................. GCGATTTCCGGCGGGGTTTCTTCCGCCTCCAG 7722914 29 96.6 32 ....................A........ GTTCAGGCCGCGTTCCGTAACCTCGCCAACGC 7722853 29 96.6 32 ........T.................... GCGGTTTCCGGCGGGGTTTCTTCCGCCTCCAG 7722792 29 96.6 32 ....................A........ GTTCAGGCCGCGTTCCGTAACCTCGCCAACGC 7722731 29 96.6 32 ........T.................... TCGAGCGGGCCGGAGTCACCGTAGGCCGTGAT 7722670 29 86.2 79 ...T.......A..T.G............ AGGCGGCGCCAGGTCTCGGGACCCGGGTAGCCGGCCTCCCCGCCCGTGCGGGGCGCGAACTGCGCGCGCTGAACGATGA 7722562 29 96.6 32 ...........A................. ATCTCGGCACGGCTGAAGGGCCGGCACCCCAG CT [7722555] 7722499 29 93.1 32 ...........A..T.............. ACCGGCCGCAAGGTCGGCATCGGCATCCGGCT 7722438 29 96.6 32 ..............T.............. TCGACCAGCCAGTAGCCGGCCCGGCGCTGGTC 7722377 28 82.8 20 C..........AGG.......-....... ATGGAGGCCGGATCGGAGAG Deletion [7722330] 7722329 29 96.6 32 ...........A................. ATGTGGGCCGACGACGTGCCGGTACAGATCGT 7722268 29 96.6 32 ..............T.............. TTCGGCCAGTTCGAAGCCGCCGACCTCGGCAA 7722207 29 89.7 32 ...........A.....A.....T..... CGGACGATGAGCCGGCCCAAGGACGGCAGCGC 7722146 29 93.1 32 ...........A..T.............. CCGACCGTGTTCACCTCGAACTACCCGATCGA 7722085 29 93.1 32 C..........A................. GAGTTGACCCGGCGCCCGCTTTGCAGACCGGC 7722024 29 96.6 32 .......T..................... TTCGAGGTCCACGCAGAAGGGCGCAGTGGGTA 7721963 29 96.6 32 .......T..................... TACCCGGCGCTCGCCCCGGCACTGCTCGCCGC 7721902 29 100.0 32 ............................. GCGAGCGGCACGCCGCCGTCGAAGGCGTCCAG 7721841 29 96.6 32 ..........G.................. ATGTCGGTCGGACTCAAGGATTTGGTCGATCA 7721780 29 100.0 102 ............................. ACGCACTGACAGCGGCCAGTTCAAATTCCCCACGTACGGCCAGTTCCGGGATCACGGACGGTAGCCAGTGAGGGTACGTAGATTGCGCCCCACAGGGTGGAC 7721649 29 72.4 0 ...G....T.......T.CT...GG.G.. | C [7721628] ========== ====== ====== ====== ============================= ====================================================================================================== ================== 30 29 91.6 35 GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Left flank : GCCCTACCTCCTCGACGGCTCCCCCACCGACATCGACCGCCTCAAGAGCGGCTCAGCAGAGGGACAGGGCGACGACGGCAGCGCGGGGCTCGCCGCCCGCTCGCGCCTCGGCGAACCGACCACCGACGTCATCGTCCTGTTCCGCCAGCAGGCCGCCGGCGCGGGCCGCCCCCGCCTCTACTACAGCTACGACCAGGGCGGCCTGCACGAAGTGGACTCCAGGTACTACCGGGCCCGCGACGACTCCGTCCGCAACGCCCGCCGCGCCCAGGAGCGGGACCGGCTGCTCAACACCGTGCCGATCCCGCACAGCTGGTTCCGACACCTGCCGCCCGTCGAGAGGTGGTACACCCCCAGTGGCGTCCGCATCAACCGACGGCACGTCATCGTCTTCGCTCCGGACGGTGCCTGCCTCAGTGGACCCGTCGGACGGCTGCGCTACAGCCCGACCCGAGGGGTGCACCCCATCCACCGGCCCTGAGGCGATACGCTGCCCCCTC # Right flank : TGGTGTCCGGTTCATCTCGCCAACGCTGGGCCCGCCCACGCGATGCCGTCCACCGCCACCCTGGGTCGCCGCCAGCAGCCCTGGAGTCGTTCCGGTGAACGCGGCAATCTCCCGGTGGTTCGGAGTGGCTACGTAACCGCACTCCATCGCGGCCCGCAACGCGCGTCTTCCTCACCGGGAACCAAGGCGTACTGCGTCACCGCACCTGCCTACCGCCATGGACTTGTCGAATATCGATATGCTCCTTTAGCCTTGGGCATATCGAAAATCGATAGGGAGGATGCGATGAACTCGCGACTCACGAGGACCCTGGCCTCGGTGACCTTTGCGCTGGCGGTGCTCTGCGGGCTCGCATTCGTCGGCACGGGGGTCACGCACATGCTCGATGACGGGGCGGTCTGCGTGCAGACGGACTTCTGGCGCAATGCCTCGCTGGGGCCGGACAGCCTGCCGGTCGGCAAGGGCGTGAAGGCGTCCAGCAGTGCCGCACGCCTCTGCCA # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 7731820-7733237 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023698.1 Streptomyces viridifaciens strain ATCC 11989 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================= ================== 7731820 29 89.7 32 ..G........CT................ CTGACCGCCGCGCTGCTGTACGCGGCGGTGGA 7731881 29 100.0 32 ............................. ACGGGGTCACCGAATAGGGCGTCGCCGAGCAG 7731942 29 100.0 32 ............................. TCATCGGTCTCGGAATGGTCCACATCTGCGGC 7732003 29 100.0 32 ............................. TTCCACATAGCCACGGTGGCAGCGGCAATGCC 7732064 29 96.6 32 ......................C...... ACGGTGACGGGCGTACCGGAGACGGCACGACC 7732125 29 100.0 32 ............................. AAGGCTTGGCAGGAACAGCAGGCCGAGCGGGA 7732186 29 100.0 32 ............................. CTTTGGAACACCGTCACTGGCGCGATCGGCAT 7732247 29 100.0 32 ............................. GTCACGGCCGCGCTGGGGAAGTACCTGTCCGA 7732308 29 100.0 32 ............................. ATGTTGCCCGACGACTCCGCCAACGCGATGGC 7732369 29 100.0 32 ............................. ACGGACGGCCACCTGCGGCTGACGGCCGACGT 7732430 29 100.0 32 ............................. CGGGTCGTGTCCCTGGAAGACGCGGTCAAGAA 7732491 29 96.6 33 .........A................... CGTGTACGGCACCACCCTGGCCGGTCTGCTGGG 7732553 29 93.1 32 TC........................... TTCACAAAACGACCGCTGCGCCCCGGGCGAAG 7732614 29 100.0 32 ............................. GAGTTCCAAACGTCCTGGAACTCCTTCTTGAC 7732675 29 96.6 32 .....T....................... CTCTACCGTTTCTAAGGGGGTTATGAGTGCTC 7732736 29 100.0 32 ............................. CCGAGCCAGGCCCGCCTCCACCCCACCCACTT 7732797 29 100.0 32 ............................. ACGGGGGCGTCGAGCGCGGCCTGGAACGCCGA 7732858 29 96.6 32 .........A................... CTGTGGGCCCAGCTGGCGAAGCGTTACCCGGC 7732919 29 96.6 32 ....................A........ CGCGCCAGCCCGGCCATGATGGCGGTGTGTAT 7732980 28 93.1 32 ...G.-....................... GTAACGAACCCCTCGGTCTGTATCGAAAGCCT 7733040 28 82.8 33 ..........A.........A...-..TC CTGCTCTCCGGTCACCCGTATGTCCCGTGGCTC 7733101 28 75.9 77 ...GG..G.....TC.......-.T.... GCAAGCGAGCCTCAGGCCCGAAGCGGTGGCGATCGGGCTTCAGCGAGCAGCACGTCACCGCCGATGCCCCGGCCGAC T [7733128] 7733207 29 75.9 0 T.....G.....T....A.C..G.T.... | T,T [7733217,7733219] ========== ====== ====== ====== ============================= ============================================================================= ================== 23 29 95.4 34 GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : CGCTCGCCGACAAGATCGGCCTCCTCCCGGTCGACACCACCGTGCGTACCGGCGACACCTTCGGCTTCCGGATCGTCGTCAACCCCACCCGGGACCGCCAGACCCGCGCCGGTGACGGCACCGTCGTCCGCAAGCGGCTCTCCGACACCACCCCCCGCCACGTCAAGGAGTGGTTCGCCGCCCGGCTCCAGTCCGTCGGCGCCGACCGCGTCGGCCCGGCCGGAGTCCGCCGCATCGGCGCCGACGGCGATCCGGACACCATGGCGATCCGGATGCTTCCCAAGCTCGGCCTGAGCGCCAAGCACCAGGGCGCCAAGATCGGCCGGGCCGAGATCAAGGGCGCCCTGACCGTCACCGACCCGCACGCCTTCACCGACGCCCTCGCCACCGGTGTCGGCCGCGCCCGCTCCTACAGTGCGGGGCTGCTGCTGGTACGGCCTGCGGCGGGCGCGTAGGAACGGCCGCCGGGGCGCGCGTTCGCCGCGCGGCTGGCGGCCGTC # Right flank : GAAATCGGCCGCGCCGCCGAAGCGCTCTACCTGGACGGCACCTCCTACCAGGGCAGTGGCGAGCCGATGCGCTACCTCGACGTCGCCGGCGGCCTGCTCGACTACTACGTCGTCCCGTGCCTGGGAATCGTCGTCGTCTGTCAAGTCACGTCACCGCCGACGCCCTGACCCCGGCATCGGGCCGGGCCAAGGGGAAGTTACGTTTTCCTCGGTGCCCGGTTCGGCGTGGTGGCACGATAAAGTGCCACGGTCAGGCGCGAGTTGGGGGTTGTCGTTGCCGGGTGACAAGCGGCGGATCCAGACGGCGGTGTTGGGCAGCGCGGATTCGGAGGAGCCGCTGATTCTTCCGCTGGAAGCGATCGAGCTGGACGCCTTCCGCCGGCAGCACGCCGCGGACACTTTCTGGTGCGGACTACTGCTCGGCGGCTGCGGTGACCAGCTGACAACAAAGCTCTACACCGACCGAGTCTGCCACTTCGCCCACTTCCCCGACCCCACCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //