Array 1 3748-3459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJU010000004.1 Bifidobacterium dentium strain 1001270B_150601_C3 NODE_4_length_328240_cov_28.8303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================= ================== 3747 24 100.0 29 ........................ GTTCAAACCCTTCCCAGCGTCCCAATCCA 3694 24 83.3 29 ........T....AG....C.... ATTCAAACCCTATTCAGCGTCCCAATCCA 3641 24 100.0 29 ........................ GCCTAAACGCACCTCAAAGGGATAAAACC 3588 24 83.3 29 .............AG...T.C... GCTGAAACCCCATTCAGCATCCCAATCCA 3535 24 100.0 29 ........................ TATTGAAGCTCTTCTGGAGTCCTGATTCG 3482 24 83.3 0 C............AG....C.... | ========== ====== ====== ====== ======================== ============================= ================== 6 24 91.6 29 TCCAGCCACTGGAGAAATCATCCC # Left flank : CCGCGGACACCCAGGAGGACTGGCAGTCCGAGGCCGCGGAAAGCACGGAAGAGACCACCGACAACGACGCTGTTGCCGAGTCCGCCGAAGATGACGACGATCTTGACATCCCGATGGACCGCGTCGAAGCGGTGCTGAACGCCACCGTCGACAAGGACTCACTGACTCCTCAGATGCAGCGCATGATGAATCGTCAGGCTGAGAACACCCGCCGTGTCGAAGAGACCATCAAGGGCACCAAGTCCAACCCGCGTTGGTTCGTGCCACTGTTCTGCGCACTGATGATCATCGGTCTGATCTGGGCCGTGACCTACTACCTGAGCGGTAGTTATCCGATTCCGAACATCGGCGCATGGAATCTGGCCATCGCCGTTGCCATTATCATGGTCGGATTCCTTATGACCATGTGGTGGCGCTGATCATATCCGCCACGAGAGGGCGTCTGGGCGAGTCCAGACGCCCTTTTGTTATGTCCGGTCACCCTTAGCCGTCCCAAAACC # Right flank : ACTACGCGATCACACCTTAACGGTACGTAGCAGAATATGCCCACCGCCTTGGATGGTGGTGCCGAACAAGTAGGTATCGCCTCCATCGGCAAGCTTGAGCTTCTTACGCAACTGCGGCGCTGTGAGCGGAAAATTGCGTACGGCGACATTCGCCCTCCCGACCCCGCTCAGCAACCTCCTCACATCCTTCTTGCCCATGCCTCCAACCGCTTCGACGGCAAACCCGCGCCCTGGAAAATCCGTCACGGGCTCAGCGGCCACAAACAGGTGACTATTCGGTCCGATCTGCGTCACACCATACCGTTCCTCCAGCAGGTCGAAACAGCCGGCTTTCATAATCGATGCATTCGGCTCATACAGATATTCCATCTCCGGCAACGGTGCCGTGCCGATGCGCAACCCACGCGCATACACCGCGGAATCGTAATCAATCCGCTGACCGTCGTTCACGCAATACACATGTGGCGCACGTACGTCATCCGTCGGATGCCTCGTTTCCA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCACTGGAGAAATCATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2271-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJU010000008.1 Bifidobacterium dentium strain 1001270B_150601_C3 NODE_8_length_122250_cov_24.6743, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2270 36 100.0 30 .................................... TTCTCCTTCGTATCGTAAATAGCAATCCCA 2204 36 100.0 30 .................................... GCAGATCCTTCGACAGGTTCGCCGGAGCTT 2138 36 100.0 30 .................................... TGTCCGCATAGTCGGTAACGCCGATCCTGT 2072 36 100.0 30 .................................... TGAGGCCATCGTTCTCCTGCAGGTTCGAGC 2006 36 100.0 30 .................................... ATACGTGGAACCGTAGCGCTTGAGAGTGCG 1940 36 100.0 30 .................................... CTGCACCAAGTCGCCACGCGACACGTCCTG 1874 36 100.0 30 .................................... TCGAAGCGGGACGTGAGCAATCTCGCCGAC 1808 36 100.0 30 .................................... GCGAACACGGACGGCTGCATTCTGAGTGGC 1742 36 100.0 30 .................................... CCTCATAGCGAGTGCAATTCCAACTTGAGT 1676 36 100.0 30 .................................... CAGATCGGTTCGAAGGAGTGTGTGCCGATT 1610 36 100.0 30 .................................... TGATATCCGCCGAATCATAGGCGTAGACAT 1544 36 100.0 30 .................................... TGGAGCCGTTATATCCGTCGCGCAAGTCGG 1478 36 100.0 30 .................................... AATGATGGCCGACATGAAAACCATATTCAA 1412 36 100.0 30 .................................... GTTCTCGACAAAAACCATGCACGCATCATT 1346 36 100.0 30 .................................... GAACATGGTGTTGAGTCCGGCCGCCAAAGT 1280 36 100.0 30 .................................... ACGACCGTTACGGACTGTGCAGGATCACGG 1214 36 100.0 30 .................................... GATTCCAGCGGCCTTCATGTCCTGCCATGA 1148 36 100.0 30 .................................... TCCATTGTCTTGACAATGTTCCGATCGGTG 1082 36 100.0 30 .................................... TAGTAATCAAAAGAAGTTGGCAAAAGGCAT 1016 36 100.0 30 .................................... CGTGATAAGGGAGATGATCGGGATTGAGGA 950 36 100.0 30 .................................... TAGGCGATGCTTTGGAAAACAGTGGAGCTT 884 36 100.0 30 .................................... CCCTCCACCGGCTGAGCGTGCTGGGCCGCA 818 36 100.0 30 .................................... GACGGCCAGGACGGTCAGTTTCGTGTCGGC 752 36 100.0 30 .................................... CGATCGCCTCATGTGCCGGAAATGACGCTA 686 36 100.0 30 .................................... TCTTGCGCAGGAACTCGCGTTTCCATGAGC 620 36 100.0 30 .................................... CATGACCAACCTCTACAAGCAACTCGCGGG 554 36 100.0 30 .................................... CGCACTGTGCTTAACGACATTGCCAAAGGC 488 36 100.0 30 .................................... CCGCCGTAAGGCCCGCACGACAGGCTCAAT 422 36 100.0 30 .................................... ATGGTATAAGCTCGGCTATTTGGTCAGCAA 356 36 100.0 30 .................................... GACAATGTTACCTCGGGCAACAACATGGAT 290 36 100.0 30 .................................... TTCGGCGGGCACCCGTTTGAGCCACTTAAT 224 36 100.0 30 .................................... ACGCCTTACTTAATGCGGGCCTGAATCTCG 158 36 100.0 31 .................................... TGTGCCCGCCTCGGCGCCGATGACGCCGTTC 91 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 100.0 30 GTTTCAGATGCCTGTCAGATCAATGACCTAGACCAC # Left flank : ACTGCGCCGATGCTATTGATTATGATTCACTATTTCAGAAAACGGCTATTAAAAAGGTGGTAGAGAGCTTTTCTCCAGAACGATTAAGTAGGGTTCTTGCTCTGCAGACGGAAATGAGAACCATCATTCAGGATGAGATTTGGAGTGAGGATTTGCCGTTGGAGGTTTCTGCTACTTTAGACTTGAAGTCGGCGGTTTCCATGGTTAAACCACGAATCGATACATCTTCTTTGGGGTCCCTTTTTGATAAAATACAGCTGGTAGTAGATACTGCCGGTGCTCTTGCTGAGAGTAAGACGCTAGTGACGCTTCATATAATTCAATATTGTGATAACGACCAATTAATTTATTTGCATAAAGAATTGTTGAGACACCATTTGCAGCTTCTCGACCTAGAATGCTGCAGCAAGAAGGCCATCCTGGCAGAAGGAAGGAGCCATTATGTCGATAAGGATTATGTTCAATTCTCATAAATTATTCAGAATCCTTTAAGGCTATCG # Right flank : CTGTCTTTCGTCAAATAAATCCGCGTGTCGTCACCAGTTAATCTGAACACCATCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 100887-98990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJU010000009.1 Bifidobacterium dentium strain 1001270B_150601_C3 NODE_9_length_100976_cov_22.9839, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 100886 36 100.0 30 .................................... CGCCGGTTCGTGCACCGGCATGTGCGGTTG 100820 36 100.0 30 .................................... ACTCCGAACGTGTTCCTTGGCCTTATCACC 100754 36 100.0 30 .................................... CAAGCCGGACGTAGGCGCCTCGAGGACTTC 100688 36 100.0 30 .................................... ACGGCCATACCGTCCGAAGCGGCCAAGTTC 100622 36 100.0 30 .................................... CCAACATCTACTATCTGGACGTGTATGAAC 100556 36 100.0 30 .................................... CAAGCCGGAAGGCGCCGCGTAGAGGACTTC 100490 36 100.0 30 .................................... GGTTCGTCACGAAGAAGGAACCGATCACCT 100424 36 100.0 30 .................................... AGACGCATGCCGTGCCTCAGCGCGGTGTGC 100358 36 100.0 30 .................................... GGCCCTTGCACGCCTTCGAGCTGGTTTTAT 100292 36 100.0 30 .................................... GAGGCCGCGTCTGACATGCGTGCGTTGGGC 100226 36 100.0 30 .................................... TGTACTTCGCCGTGGATGACAGTCTGCGCA 100160 36 100.0 30 .................................... TGGAAAGTCTGCCTGAAACCGATAGGGGCG 100094 36 100.0 30 .................................... CTTCATATAGGGTTGCGGCAGCCTCAACCG 100028 36 100.0 30 .................................... ACTGCGCCGAATCCAACAGCCTGAACATTT 99962 36 100.0 30 .................................... TGGTTGTACAGGTTGATCGTCTCCTGTAAC 99896 36 100.0 30 .................................... ATCAGTGAGAGGGTGAACGGAAAGAGGTCG 99830 36 100.0 30 .................................... TGAATGATGAAGCTGAAGCGCGTATGTGTA 99764 36 100.0 30 .................................... TGACCCGTGACCGTGCGTGGGCGCAGCAGA 99698 36 100.0 30 .................................... ACTCATTTATGACGTGGTGCAATTCCATGC 99632 36 100.0 30 .................................... TCATGGCGCAACCCCCTTCTATATTTTCGA 99566 36 100.0 30 .................................... TTGGTGTACAACCGGCTAAACTTTTTTAGA 99500 36 100.0 30 .................................... AACCTCATTGCTCAGGAACCGTAGGTTGTC 99434 36 100.0 30 .................................... TTCGAGACGGCAACCGTCCGATACTTGCGT 99368 36 100.0 30 .................................... GCGAACTGCCACCCGGAGTCGAATATAAGC 99302 36 100.0 30 .................................... GTCAGGACAGCAACAATCCGGTGATGGAGA 99236 36 100.0 30 .................................... TGGCGGAACATTGCGCACAATCCTTACATA 99170 36 100.0 46 .................................... CGTGTATGGCCGCTATTCCCTACCGACCGCGTTGAAGCCGGTCGGT 99088 35 86.1 27 ....T.-.........G.........T......A.. ATTTGTATGCAATGTATGCAGTCGTTT T [99055] 99025 36 77.8 0 .......G..T.....G...T....GA.....T..T | ========== ====== ====== ====== ==================================== ============================================== ================== 29 36 98.8 30 GTTTCAGATGCCTGTCAGATCAATGACCTAGACCAC # Left flank : CTCACACCGTTCAGATTTGGTGGTGACGCCGTACACGTTTATTTGACCATAAACAACCACTTCCATTGGCGAGTCCAGTCCGTGACCGT # Right flank : CCTGTCAACTTCATGTATGGCGACAATTTGCAAGTGCGTTGTTTTGCAGGGATGAGCGACAGGCGATTGCTTGATAGTTATTATTCTGCACAGATTGGAATATCAACCATTTTGATTACTCTGGTCGTGATGTTGTTGAATATGTGAAAGCCGGGAGTGAGATGCGCTGTTCCCGGCTTTGTAATTCATCCGGTTTGATGTGGTTGGATTATTTTGCCGTCAGCAGGTTGTTGATGTCTATGAATACGGGATGCTCCGGTTCGTTGCCGTTTTGAACATGCAGTGCATAAAATTTTCGTCCGCTTTGATCTGGGAAAACCATGCCATGCCCACCCTGCTCGATCACAGGTTGTTCGGCATGGATCCATGTACCATGAATTGTGTTATCCGAGGAGTATGCCAATCCGACTGAGTAGCCGTTTCGGGCCCAACTGGACCACAGCATGACGAGCTTGCCGGACTCAGTACGTTCCAGATATGGTCCATCGGAGAAGAACGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //