Array 1 12685-13880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUT010000011.1 Phocaeicola massiliensis strain 1001095IJ_161003_H8 NODE_11_length_108264_cov_23.1727, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 12685 47 97.9 29 A.............................................. TTTGAAACGTATTGCTGTTGCCAATGACT 12761 47 100.0 29 ............................................... TCCATTGTAGATTTAATCTTGGTGTTAGC 12837 47 100.0 29 ............................................... TCATTCCAACGCCTTACAATCCCCATAGA 12913 47 100.0 30 ............................................... AGGATTTGGAGTGCTGCGAAGCAACCTATC 12990 47 100.0 30 ............................................... AGAGTTTAAAGGACACAGAGACAACAGAAC 13067 47 100.0 29 ............................................... CCTCTTAAAAGGTGGAAGCTTCCGTGGCT 13143 47 100.0 30 ............................................... TGGGGGTTGTTGGTGGCCAGCGAATAGATG 13220 47 100.0 29 ............................................... TTGTACAAGCGCAAAAGGAGTTGGATTTA 13296 47 100.0 30 ............................................... ATTTGCGAAAAGTACCTGATGGGGTCTCTT 13373 47 100.0 29 ............................................... GAGCTATTAAGATATCTAGGAGACAAAAT 13449 47 100.0 30 ............................................... TTCAGGTATCGGACAGTCTTCTAACCTTCC 13526 47 100.0 30 ............................................... TCAATAGGTTCTTTCCGCTTAGTCTCGCGA 13603 47 100.0 30 ............................................... TCGGAAGCGGCAAGGGAGCCGGTGTAGTTA 13680 47 100.0 30 ............................................... AATGGATGTTCTTTCCTCTCGTGGAAAGAA 13757 47 100.0 30 ............................................... GACCGAAAAGTAGGTGTAATCGAAAGGAAA 13834 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGAAAACAGC # Left flank : CAGCAAGTACCCAAACCCTGCTCGGTAGCAGCCAGACAGAGATGTTCCACCGCAATAGCTATATCAATATCTGCATGATCTTTATTGTCGGCACGACGATGCCAAGACTCTTCATGGTTTGTGCAAGCCACAATGATACAGGGAGCTGTGGCAAGCCACTCACGCTTATAGCATTGCTGCAACGCCTTTAATGTAGGTTCATCTGTGACTATTTTAAACCGCCACGGTTGGAAATTAACTGCCGAGGGAGCCAAGCGTACACACTCCATGATATACTCCAATTTTTCTATCTCAACCGAACGACCGGCATATTTGCGGGCAGAATAGCGCGCTTTTACTAATTCTAGAAAGTTCATAAGCATTATTATTAGTTTGCAGACAAAAATACTAACTTTGCTAATATATCCCAAGCTTTTTGCAATGAGTATCATTTATCAATTGCTTACGAACTATTTATATTCTCATTTTGTAATTTTCAATCCTATTATTATCAAATTACT # Right flank : CTGAATATATATTACAAGCTAATTACCAATTAGTTACACATATATTCAGAAATTAAAAACAAAGTTGTTTTCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGAAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 179527-178544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUT010000004.1 Phocaeicola massiliensis strain 1001095IJ_161003_H8 NODE_4_length_187540_cov_20.5393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================= ================== 179526 32 100.0 34 ................................ TTTGATTCAAACAATATCTGTGCAGCCAATTTTG 179460 32 100.0 35 ................................ TCAGATGGGCAGCGGATAAAGGAATCAATAAGGAA 179393 32 100.0 55 ................................ ATGGGTGGTAAGGCTACAGCGTTGAGCACCAGCCGTCACACCTCATGNNNNNNNA 179306 32 100.0 34 ................................ ATGGGTGGTAAGGCTACAGCGTTGAGCACCAGCC 179240 32 100.0 34 ................................ ATTTACAATTGAAGGAAAATCCCAATCCGACTAT 179174 32 100.0 34 ................................ ATGGGTGGTAAGGCTACAGCGTTGAGCACCAGCC 179108 32 100.0 34 ................................ ATTTACAATTGAAGGAAAATCCCAATCCGACTAT 179042 32 100.0 34 ................................ ATGGGTGGTAAGGCTACAGCGTTGAGCACCAGCC 178976 32 100.0 35 ................................ ACCCTTGTTGATGTCCTCCTGTAGATCCTGTCCTT 178909 32 100.0 35 ................................ ACCCTTGTTGATGTCCTCCTGTAGATCCTGTCCTT 178842 32 100.0 35 ................................ ACCCTTGTTGATGTCCTCCTGTAGATCCTGTCCTT 178775 32 100.0 34 ................................ AAGCGGGAGCCAATGGAAGTAGCGTCCTGTTTCT 178709 32 100.0 34 ................................ CTTGACTATCTACGGAAGCAAAAAAATATCCCTT 178643 32 100.0 36 ................................ TTGTCCAGCTCACAGAACTTGGCAGAGTAACGCTCA 178575 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================================= ================== 15 32 100.0 36 GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Left flank : TGATAATTATCCGGTATTTCTAATAAAATGATTTACGAGTATGTATATTCTTGTAACTTATGATGTGGATACTACGAGCAAGGAAGGAGCTCGCCGTTTACGGTGTGTGGCTAAGGCTTGCATAGATTATGGACAGAGGGTACAGAATTCTGTCTTTGAATGTGAGGTGACAGAAGCACAATATTGTCTTTTGAGAGGAAGAATCAAAGATATCATTGATATGTCTCGTGATAGTGTTAGATTCTATATTCTTAGTAAAAATGAGAATAGAAGGGTGGAAGTGATAGGTGTCGAAACTGCTTATAAAGTTAATAATGCTTTTATTGTATAATGTGTGCGAATGTGGAGTGTTGCAAAAAAAGTAGTATCTTCGCAACTCTTAATAATCAGCAGATTGACTTGTTTATAAGGCGAATGCCGTTATTCAATTGAAATAAAAATGAGAATTCGCATATTAGTAGGGTTAATTTATTGATTTATAATATACAACTCTGTATACA # Right flank : TAATGTGCAAGCTACGCCAGTAGGACCATTGAACTTACGCTACAGACGCTACTTTCAATCTTCCTCTTTTAAAAAAGAAACAAACTCGGGTGAGTTTCGTTCCTTCGGCAGCAAGGTCATCGTATGTATAGGAAAAGGGTTCACCGGTGGCTTTATCATACCAGCGACGACGCCGGACATAAAGATAGACAGGTTTGCCACGCAGAGGAAAGTCCTGAATTACTTTTTCATCTATAAAACCACTGGAAATGACAGTACCGTTCTTGTAATCAAAACGTTCCATATAATTCTTCTCATCAAGCCAAACTTCGATTTTTGAAGAATCGTCATGCCAACCGGATATGTCGAAATATTCCATTAAAACTTCAGAGAAGATTATTCGAAGTAACTTATGCAGACTGCGATTGGGATTCATTGGATTGGTTTGTTTAATTTAAATGCAAAAATAATGTTGTTTGGATAATCTACACGGATCACCCACAGGATTTTCGGATTAATCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA //