Array 1 1845934-1842350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016954.1 Cutibacterium avidum strain DPC 6544 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1845933 29 96.6 32 ............................G TTCACCGGCCAGAAGGTCGACGAGCTGGGCTT 1845872 29 100.0 33 ............................. ATCGGAAATTTGGACGACATCATCATGGGGATG 1845810 29 100.0 32 ............................. GCAACCCACCAAGCACCTGCCCAGGGTGCTTT 1845749 29 100.0 32 ............................. CCGGTCTGCCTCGGCGCACTACGTCTGTGACG 1845688 29 100.0 32 ............................. TGTTGAAGCAAAACGGCGTTGACATTGGCGCT 1845627 29 100.0 32 ............................. ATGACACGATGTCTCATGAGGGTTTTTGTCGG 1845566 29 100.0 32 ............................. CGGAAGCAGGTGTCAAAAAATATGTTGAGCCG 1845505 29 96.6 32 ............................T AGTGGGCAGTGGAAACAGCCCGCCCCTCCCTA 1845444 29 100.0 32 ............................. CATGATTGCAAACAGCGTGGCCACGGAAAATA 1845383 29 100.0 32 ............................. TTCACGCGCTATCCTCTGTACTTGTCGAACAT 1845322 29 100.0 32 ............................. TGTGGGGCGACTATCCGTCAATCATTGTGATA 1845261 29 96.6 32 ............................G TAGAGCTTGTCGAGCTCTCGTGCCACCTCATC 1845200 29 100.0 32 ............................. ACGCCGGTCACCCGGCTGGTCATCCACGCCAC 1845139 29 100.0 32 ............................. GGTAGCTCCCACGGCCCCACCGGTGACAACCA 1845078 29 100.0 32 ............................. AACCCCCTGCGGTAGACCGCCGATGATGTCCA 1845017 29 96.6 32 ............................T GCGCACACGCCACCACAGCGACTCGCCATCGC 1844956 29 100.0 32 ............................. GTGAAGTCGCCCACCTGATGGAAGTCGAAACT 1844895 29 100.0 32 ............................. ACGCGACGCGACTAGGAAATACAAGCGTCTAG 1844834 29 100.0 32 ............................. CCGAATGCGGCCAGTCTCCACGCTCACATCCC 1844773 29 100.0 32 ............................. TGGCGCGACAGCCTTCGTGGTGCAATGGACGG 1844712 29 100.0 34 ............................. GATCATTTGCGTCGACTCAATCGTGCCGCCGTCA 1844649 29 100.0 32 ............................. AGCTCGCCCGCATCGTCGGAGAGCAAGTCGCA 1844588 29 96.6 32 ............................T CCACATGCCAGCCCCCGGCTTCCATAGCTGTG 1844527 29 100.0 32 ............................. TCGGCTACTCCCTCTCCGACATCGCCACCTTC 1844466 29 100.0 32 ............................. GTCAGCCTGGAGCCGGGCCGGTTGAGTTCGGT 1844405 29 100.0 32 ............................. ACGTGGGCGGCGTCCTCCCGGTCTCGTGTGTC 1844344 29 100.0 33 ............................. CGCATCCCTACCGGGCACCGTAGCCCCGATGTC 1844282 29 100.0 32 ............................. AGTGTTTCATGCCGCCACGACAGGCAAGGAGG 1844221 29 100.0 33 ............................. CCGTCGGCCTCGCTCGCCAGGTCGAACTGGGTG 1844159 29 100.0 32 ............................. GCTCAGCGGCGACTCCCCGCTGAGCTTGTTCC 1844098 29 100.0 32 ............................. AACATCACGTATGGCTCTAGTGATCTCGGGCT 1844037 29 100.0 32 ............................. AACGCGAGCCAGTGGGGCCGCGACGGCACCGA 1843976 29 100.0 32 ............................. CATCGCCCGATGGCAACGCCAGCATTCTTCAT 1843915 29 100.0 32 ............................. AACCCGTAGAACGGCGCCCCGTCAGCCACCGC 1843854 29 96.6 32 ............................G CAAGCATCGTGCCCGCTGACACCGTTGCAGTG 1843793 29 100.0 32 ............................. GAAGTGAGGGGGTTATCTGTATCTGTATCTGT 1843732 29 100.0 32 ............................. CCGTCAGCCTCGCTCGCCAGGTCGAACTGGGT 1843671 29 100.0 32 ............................. TCATCGCGACGGCCCTGGGTGTCCCCGCCGAT 1843610 29 100.0 32 ............................. AGAATCTTGGCGATCTCTCCCCACACCAAGTA 1843549 29 100.0 32 ............................. GCATGGCTCACCCGTCACCTCTCTAGCGCCAT 1843488 29 96.6 32 ............................G CAGGCCGCCCAAAACTCCAGACCACCACCTCA 1843427 29 100.0 32 ............................. TACACCGTCGCGGCGTCGATCATCGGCGTGGA 1843366 29 100.0 43 ............................. GCCCGTCAGCTGCGAACGCCCGTCAAATGAATCTCACTCATGA 1843294 29 100.0 32 ............................. GTCTCGACCACCGCCGCGATGTACTTGTTCTC 1843233 29 100.0 32 ............................. AGCATGTAGGTGATCGTGCGCTTGTCGTTGGG 1843172 29 100.0 32 ............................. ACCCCCTGGACGGACTTGCAGCGGCGCTCGGA 1843111 29 100.0 32 ............................. ATTTTCGGCATCGAGAATGACCGCCGCGAGAA 1843050 29 100.0 32 ............................. AGCTAGGGGCCGTGTTGAGAAAATATCGCGAA 1842989 29 100.0 32 ............................. CGTGTGGGCCTCCATTGGCCGGAGGCCCACAC 1842928 29 100.0 32 ............................. GGCGAGTCCGTGCCATGCAGCGGAGCTGGCAG 1842867 29 96.6 32 ............................T CCACGGCGCGGGGTGCGGGTCACGGTCGGCTG 1842806 29 100.0 32 ............................. GTGACCTCATCTCCGAACGGACCCGCGCAGGG 1842745 29 100.0 32 ............................. AGCCATGCGCCGATGCTCGTCATGGTTTCGTT 1842684 29 96.6 32 ............................T CGGCTCCGCCGACCGTTACCCCCGCTGCCATC 1842623 29 93.1 32 A...........................G TGGAGGGTCGTGCCGGGTGGTGGTTCCTCGAT 1842562 29 93.1 32 A...........................G GCGTCGACCTCACCGGCGCCACCCTCACCGAT 1842501 29 100.0 32 ............................. GTCAAGTTGCCGACCGCCACTCACACAGCGTT 1842440 29 96.6 32 A............................ CCGTAGGCATACTCTTTTGGGAGCTTCGGTTC G [1842423] 1842378 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =========================================== ================== 59 29 99.1 32 GTCTTCCCCGCCTACGCGGGGGTGAGCCC # Left flank : GGCGCCCCTGGCGAACCCGATGAAGGGTATGGCTGGGACATCGTCGAGCTGTGGGATGACCGGGAAGGCGCTGTGCCCGGAGGACGGTCCTGGGGGCAGTCATGATCGTGCTCGTCCTCACCGCATGTCCAGCAGGTCTACGAGGCCACCTCACCCGATGGCTGCTGGAGATCAGCCCAGGGGTCTTCGTAGGGCACGTTCCGGCTCGCGTCAGAGATGCTCTCTGGGACCGTACCGTCGAGATGTGCCGAGACGGGCGCGCAATATTGGTGTACACAATACGCGGGGAACAGCACTTCGAATTTCGAGTGCATCGTCATGACTGGGATGTCGTCGATTTTGATGGACTGAAGCTCATACAGAGACCGAACAATAAGGCACACACCTCGACACTGCGGCCGGGATGGAGTTCTGCTGCGCGGCGTCGTCGAGCAGCGAAGCGTTAGACCGAGTATACTCGTATCTGCTCGAGGCTCCTGCATCAGCCGTAGTCAGCTGGT # Right flank : GTCGGCGCACTGGCGACCGCTGCCGCTGAGCTGGCCGTTCATCATGACTCCCATCGGATACGAGGCCCGTTGTTGATCGTCATGGTCGTTGCGGTCGCTATCGGAGAGATCACTCAACTGGTTAGCGCACTGCTGTAACTCATCATCTATAGGAGAAGGACAGGCACAATGAACAGACTTCGGATCATTGGCGGACTCATGGCAGGTATGTGCCTCTTGACCGGATGCTCGCATACGCAGTCCACCCCGGCACCCTCTCCACGCGACCCAGGGCGATCAGCGGCCAGCACTCCCGCTACGGCGGCGAGCAGAAACACCGCGCAGAAGGCGGCACCGTTCAGTGGCGCATGTGTCAAGACCGACAAGATCGACCTCAAGCGAGTCGATACGGCTCCGCAGGTGCGCTGGCAGAAGATCGGCAAGACGAAGGTTCCATTGACCACTGCCGGACCGTTCGAGGTCTCGGGATTCCAGCAACGTTGTTTCTCCCCGGATTTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //