Array 1 13329-12901 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMPO01000044.1 Xanthomonas sontii strain PPL3 PPL3_contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 13328 31 100.0 35 ............................... CACCAGTGCGCGCAATCAGGCAATTTCGGAATGCG 13262 31 100.0 36 ............................... GCTAACGTCACGAGGGCGGCTGTTGCTTCCGTCACG 13195 31 100.0 37 ............................... CCGTTCAGTGTGTTGAGGTCACGGTGTACAACCCGTG 13127 31 100.0 35 ............................... TTCAATTCGCCTTCGACGGCCTCAATCTCTTTCAG 13061 31 100.0 34 ............................... TGCGGCGTGGCGCAGATGTAGAGCTTCGAACCGC 12996 31 96.8 34 ................T.............. CTGGCTTGCAAGATCGACGCGCTGGTCGGTTCCG 12931 31 93.5 0 ..........T..A................. | ========== ====== ====== ====== =============================== ===================================== ================== 7 31 98.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGAAGATTGCGCCGAACTGCACACCGCAGCACCGGCGATCCTGCACCGCCGCGCGCCGACGCTGGTGGCGGCGTTCGCGCAACGCGGCTGGGCACTGCCGGAACGGATCGATCGCGTCTATTCGCCGCAACGGGCGCTGGACGCACTGGGCTGGCAACCGCGCCATGGTTTCGCGGAAGTGCTGCACCAATACGACACGCACGTGCCCGAGGTGCTGCCGCCCAACGACGGGCGCGCCGTCAGCGACTGAGCGCCTGGCTCGGATCGGCACACCGGGTTCGGATGGCGGAGCAAGGATGTGCGCCGTCGGCGCGAACCGGAAGCGCCCGGGGTTTTACCGGCCGGTTCGCGAATCCCGATAAGCACTTGATCGAAAAAGCGAAATGCCTGGGCACCATGAAACCGGGCAAGGCAGCCCCGCCCCCTGCACGTCGCCGCACGCCCGTTTCGCGAAATCGGCACTTTTTCCTTAGTCCCGGCCGGCAGTTATGCTGAGGGCG # Right flank : CCCTTGCCGGCAGGGACTCGCTCACGCATGCGTTTCCCGCCATCCAAGACGCCTGGGTGAAACCGTGCCAGGCCCTTGGTTGCGCGGAGGCGCGATTCACGACATCACCGCACCATGGACCTCAGCGCAGCAACAACGAAATACCGAGGCCGCCCTGCCAATCCGGGGTCTGCGACGACAGGCCGCGCAGCACCGACAGATCCAGTTGCACGCGGTTGGCGAACAGCCAGGTGACGCCGCTGCCGAGCGCGCGCATCTCGTCCTCGCCGCCGCCGATGCCGGCCTCAACGTAGGCGCTCAGCGTGTCGCCGGCGTAGAAGGTGTAGCTCGGCGAGACGCTCCAACCGGAGCCGTCCTCGCTGTCGCTGACATTGCCGTACAGCGCCAGGCTGCGCCCTTCGGGCAGATCCCAGCCGGCGCTCACGCCCAGGTCGTAGCGGTGGCCGGCATCGCCGTACGGCGCGCGCCCGACCGGCAGGCTGGCGCTGCCGAGCAAGGCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15127-18828 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMPO01000063.1 Xanthomonas sontii strain PPL3 PPL3_contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 15127 31 100.0 35 ............................... TCCACACGTTGTCTGCTGCCATCCATCGGTAAACT 15193 31 100.0 37 ............................... TCAGTCGGCGGCGCCCAGCGGCCAATGAAGCCTCGCA 15261 31 100.0 35 ............................... AAATGCTGGACCTTGGGCGAAGTGGGCGATTGTCA 15327 31 100.0 33 ............................... TTCCGCTAATCGGATCAAGGCACAAGGGGAGGG 15391 31 100.0 33 ............................... CAGGACCAGGTCGCGCCGGTGCGCGCGAAGTTC 15455 31 100.0 35 ............................... CTTGGCTTCGCCGCGGTAGGCGCCGGTGTGCGGTC 15521 31 100.0 36 ............................... CTTCGCAGGTGGAACGACGGCCTGCCGGATGACGAG 15588 31 100.0 36 ............................... CAGATGCCGCCCTTGTTGTTGACCAGGCTGAGGCCC 15655 31 100.0 35 ............................... CTGGCGCAGCTGCCGAAGCCGGCGGATCTGCAGAC 15721 31 100.0 33 ............................... AACAGTCCTGAGGAGGACACATGTTCGCATCGT 15785 31 100.0 35 ............................... TGCCAAAGCAGCATTTTGACGATTACACGTCGGCC 15851 31 100.0 35 ............................... ACCATCCCGGTGAACATCACCGCCGCCGCGACCGC 15917 31 100.0 34 ............................... ATGATCCCCGTGCAGTCGATGCTCATAAGGCCGT 15982 31 100.0 34 ............................... TTAGTCGCCATGCCGGTCGCGTCATCTTCCGATT 16047 31 100.0 35 ............................... TTGGCGTGCCCAGTGCCGCTGCAGTCCTTGCATTC 16113 31 100.0 35 ............................... TTGCCGAAACGCCAGGCACAGCAGCAGCACGATCA 16179 31 100.0 37 ............................... TTCAGAACCATGCTCAGGCCAGAACGAGTGACCAAAC 16247 31 100.0 35 ............................... TTCAAGCCACGAGCGACCAGCGAAACCTCGGTGAT 16313 31 100.0 34 ............................... AAGTCCACGCGCGAGGCGTTGTCCTTGATCTGCT 16378 31 100.0 34 ............................... ACGTTCCTGCGCGTGCCGCCCGGCCTGATCTGGG 16443 31 100.0 34 ............................... TGAGCCTTGTTGCTCTCACCGCCCATCACTCACC 16508 31 100.0 34 ............................... CGCCTATTCGACTACCAAGCACACGCGCATGGTG 16573 31 100.0 34 ............................... ATGTTTCGCGGTGCTTACAAGCAGATAGCGGACG 16638 31 100.0 35 ............................... CTGATCGGGAATGCTAACACTCGGTGGAGTTACAG 16704 31 100.0 34 ............................... AGACTTGGACGGCGGACTGTCCGAACGGACATGA 16769 31 100.0 34 ............................... AGCTCATGAGTTTCTGGGACGGCATGACAAACTT 16834 31 100.0 33 ............................... CGTATTTGCCGGCACATCCTCATTGCTGGCTAC 16898 31 100.0 35 ............................... AGACGATCCGCGATGATGTTTGCCGCGACATCGCG 16964 31 100.0 34 ............................... TTGAGTAGTGATTCAAAACCGTGCTCTGTGTGTA 17029 31 100.0 36 ............................... TGGTTTCCAGCTCGGGCACATGTGGACGCCTGAGGG 17096 31 100.0 34 ............................... TCGGTCTTCTGGCTGGCTTGCTGATCCTTCGTGG 17161 31 100.0 35 ............................... GCCATCGCGGTGCGTGACTTCCGCGTCCGTCAGGC 17227 31 100.0 34 ............................... TTGCTCCGGCTTCATCTCGAGGTTGTATTTCGTA 17292 31 100.0 34 ............................... TTGATAGATGCCCTTGTTGACACCATTTCCGGTT 17357 31 100.0 36 ............................... CAGGCCTCCCGGACCTCGAATGCCGTGGCGTTGCAG 17424 31 100.0 34 ............................... TCGGTCTGCCGGGCATCGCGAGCGTTGCTGCCGA 17489 31 100.0 33 ............................... GCGACAACGCCGAGCAGCCGGCGCCGCTCCGCG 17553 31 100.0 34 ............................... AGCAGCAACAAGGGGCGAGACTTTGCTGTCGTGG 17618 31 100.0 34 ............................... GGCTGGTTCGGGCCGCGATTGATCGCAGGGCAGC 17683 31 100.0 35 ............................... TTGCCCTTGTTGTACTGCTCGACCGCGTCCTGCAG 17749 31 96.8 34 ............A.................. AGGCTCTGGGTCGTGACCCTCGCCGAGTTGACCA 17814 31 100.0 34 ............................... ATGTTCGTGTCGTAGATGATCTCCGGCCTGCCGA 17879 31 100.0 34 ............................... GCTGTCTCCCATCGCTCGATCTTCCGGCGTCCCT 17944 31 100.0 36 ............................... TTGGCGAGTCAATGGTGCGCCGGAGCACCTCGTATA 18011 31 100.0 35 ............................... CACTGCAGCGACGGCACGCGGTGCATCGGACCAGC 18077 31 100.0 34 ............................... GCCAGCAGCTTCAGGCGGGTCTCGATGCGCAGCT 18142 31 100.0 36 ............................... TGCAGCTCGACCAGGTTGGTGCCCTCCACCGTCCGG 18209 31 100.0 34 ............................... TGCGAGGGGCTGGACCGCTATGCGCGCGAGCCGT 18274 31 100.0 34 ............................... AAATGAATTACGCCCTTGTCGGTTTGTATGGCTT 18339 31 96.8 35 ..T............................ GCCTTGGTGATGGCCTACAACCTCGCGCAGCCCGG 18405 31 100.0 33 ............................... CCAACTCGAATGGCAAGTGCGCCCCTGAGCCTT 18469 31 96.8 34 .......................G....... ATGTTCACCAACGTCAACGGCATCGTCTTCGGGG 18534 31 93.5 35 ..........A............G....... AACATGGGCGGCACGGCGTCGGGCTGGGTCGGCGA 18600 31 100.0 35 ............................... GGCTATTTCCCGCTCGCTTTTTCCACCACCGCGGT 18666 31 96.8 35 ...........G................... CAGCACTACGAAGCGCACGACGGCTTCACCCTCAA 18732 31 96.8 35 .......................G....... TTCTTCGGCGCCGAATGGCGCGACCGAAGCGCCGA 18798 31 93.5 0 ..........A...............C.... | ========== ====== ====== ====== =============================== ===================================== ================== 57 31 99.5 35 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : AAATGACAGGGACACGCGCCGCATGATGGTCTTGGTCAGCTACGATGTCAGCACCAGCTCCCCTGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAGGCCTGCAGAGACCGTGGGCAGCGTGTCCAGTTCTCGGTCTTCGAGATCGAAGTCGACCCCGCGCAATGGGCCGAACTTCGGCAGCGCCTGTGCGACCTGATCGATCCCGGCATCGACAGCCTGCGCTTCTACCATCTTGGCGCCAAGTGGGAAACCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTGGACCTCAAGGGGCCGCTGATCTTCTGACGCGAACCGCAAGCGACCGGCACATCCCGGCGAGGTTCGCGCATTTCGCAAGCCATTGATGCAGAAGGAAAGCGCTCGCCATCCGCACTGGATACCGACATCGACACGGTCGCGCGGCACCTCCCCGGCGCCGGTTCGCGCGAACGCCGCTTTTCCTCCAACGCGTCTCTGCACTTATGCTGGGGCA # Right flank : CCTCTCCCTACCAGCTTTGAATCCGCACTCCGAGCCGGAAGCTCGACTCTCCGCTTTGCGGCATCCCCCTGACAAGGTGCCAGACCTCAGACGTACCCGAGCCCGCGCCAGTAGTCCAGCGGACGCCTGGCGGGCACGCCCAACGACGCCGCAATCTCGAGAATGCGCGGCACGTCGCGCCGGTAGACCACAAACAGGTGCTGGTCTTCGGTGGTCATATCGTCGATGTCCACCACGTCGTAGCCGTCGCCTTCGTCCGTCCACTCGGCAAGGTGGCGGTCCAGCCAGGTGAAGTACTCCGGCTGCGTCTTCACGTTCTCGGGATAGGCAGGGAATGCGTCGCCCATCATCTGGCGGAGCTCGTCGTGGACATCGACCATCTTGTCGCTGTTGGCGGAGTAACGCTCCATCGCCGCGGTGATCGCGACTGCATACGCCTGTTCCTCGCACTCGGTCCACTCCAGCTCCGGCAGGAAGGCTTCGATGTCCCGAACGATCTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //