Array 1 95049-94594 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAGD01000029.1 Escherichia coli strain KG-17 NODE_4_length_300862_cov_7.6765_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95048 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 94987 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 94926 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 94865 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 94804 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 94743 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 94683 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94622 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122241-120748 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAGD01000029.1 Escherichia coli strain KG-17 NODE_4_length_300862_cov_7.6765_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122240 29 100.0 32 ............................. TAATACGCATCTCATTCATTGTGCCTTGTCGA 122179 29 100.0 32 ............................. TCCACGTAGACCCTAAAACAGGTAAACGATTA 122118 29 100.0 32 ............................. TCGACAGTGAATTGCTTGCGCAGACGCGTGAA 122057 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 121996 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 121935 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 121874 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 121813 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 121752 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 121691 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 121630 29 93.1 32 ..A.........................T AGATCGCGCCACGAGGAAACGAATATGAACGG 121569 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 121508 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 121447 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 121386 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 121325 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 121264 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 121203 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 121142 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 121081 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 121020 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 120959 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 120898 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 120837 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 120776 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //