Array 1 403419-404302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001858.1 Dickeya zeae NCPPB 3532 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 403419 29 100.0 32 ............................. ATTTGGCAGGGATATCCCCTTATCGGCCATCA 403480 29 100.0 32 ............................. TTGTAACGACAGATTTGGTCTGACTGATAATG 403541 29 100.0 32 ............................. ACAACCCCAGACCGCCCACAACGCTCATCAGC 403602 29 100.0 32 ............................. TTCCAGCTCGCCATCGCCGGGTTTTTCGGGGC 403663 29 100.0 32 ............................. GCAGGCTACCGGAGTACCAGCCATCCGACGGC 403724 29 100.0 32 ............................. GCTAGCCTGGTCCATTTGGCTACGTTCTTTTA 403785 29 100.0 32 ............................. CTCTGCCACATTTTTTCTCAACAACGGTACAT 403846 29 100.0 32 ............................. AACTCAGCACCGTTGACGATGTCACCATGGAC 403907 29 100.0 32 ............................. CGGCCGTTCGTTTTTGATGCCAATTGGGAAGG 403968 29 100.0 32 ............................. AAAAAATGACTATCAGTCTGTCGGGATTTATC 404029 29 100.0 32 ............................. CTGAAGTGGTGCTGTTCCTGCCTGGCTGGCGG 404090 29 100.0 32 ............................. CGTTAGATAGGTTTCTGACCTGGGATGAGATA 404151 29 96.6 33 .....................G....... CTCAGCAGTTTGAGAATTGGCGTGCTCCAACGA 404213 29 96.6 32 .....................G....... GATGGTTAATGTAATTCTCTTTCAGCATGTGA 404274 29 89.7 0 ...........A..............T.A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGCGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCTGCCATTCCCGAACCGGCACCCTTTGGTGACGCCGGGCACCGGGGGCATGGTGGATGAGCATGCTGGTGGTGGTAACTGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGTGATACCTCGCGCCGGGTACGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCCGATCAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAATCCGGTTTTGAGTTCCAGACCTACGGTGAAAACCGCCGGATGCCGGTGGATCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCTGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCATGTCTCTAAAACACCTTATAAAACAGGTATATACTTTTAGA # Right flank : AGAAACAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTGGGTGACCGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGCGGGTTTTTTGAGCGCCAGTGTCTTCGCTGCCGGTGCGGATGAGGGCGCAATCATCGGTCGGTTGCGCGCCAGATTGTAAGAGCTGCCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGGGATTGCGTGGCGTTGTAGCCCTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCAGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGTCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 646066-647133 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001858.1 Dickeya zeae NCPPB 3532 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 646066 29 100.0 32 ............................. ATGTTGAACACGAGCCTGAAGGTCAGGCGAAC 646127 29 100.0 32 ............................. TTGTAGCTATAATATGGTGCCGGTCGCCTTAA 646188 29 100.0 32 ............................. GCTATCGGATCGGCATCATCGACCGTAGCCAG 646249 29 100.0 32 ............................. GGCGGCTACACCTCTGAAAAGGGCCAGATGAA 646310 29 100.0 33 ............................. AGCGGGATAGCGCCCCCGGCCAGGTGTCTAATC 646372 29 100.0 32 ............................. TAATTGCTCCTCAAAATTTCCGGTTAGAAAAA 646433 29 100.0 32 ............................. TCTTCCTCCGTCCAGCCCATCAGATACACCGC 646494 29 100.0 33 ............................. GCCGTCATTTTTGCCGATGCAAGCCTTGATCCG 646556 29 100.0 32 ............................. GAATTTACCGCCCTCACTTGTGTGAGCGTGCA 646617 29 100.0 32 ............................. GGCACGTGTTTGGTCAGCATACCCGATGGACC 646678 29 100.0 32 ............................. GCTTTCCAGATTTGGGACGCCGCGCCGCCGTC 646739 29 100.0 32 ............................. CGATACTTAAAATTAAAGATATACCTGAAAAA 646800 29 100.0 32 ............................. TGGAATGACTACCTGCAGCAGCGGGAATGGCA 646861 29 100.0 32 ............................. GAGTTCGCCTGGCGTTTTGTGAATATTGTAGC 646922 29 100.0 32 ............................. AAGACGGATTTAATGAAGCCCTGATGAAATTG 646983 29 100.0 32 ............................. GACATGCAGACATTGATCGGCATGGGCGGCAC 647044 29 100.0 32 ............................. CAGGCCGGATTATTCCAGACAATTCTAGGGGT 647105 29 86.2 0 ............T............G.GT | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAACGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCACTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGTGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTGGTAATGCCGGTATAAAGCCATCCGCTGCCAGTACGCAGCAGGTACACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACAAGCATCATCGGTGGATATGGGTGAGTAAAAACACCACCTTTATTTATCAATAGGTTAGCGCTCTTTAATAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTGCCGTGATAGCGCGGCACAATCCGTCGCGATACTCTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAAAGGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACTACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCAGCTATCTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACATGGTAACGATGATATTGATATCGCGCTGGCGGAAACCAATGCGGCCATCGCTTATGGTGCCGACGAGGTCGACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3657522-3658319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001858.1 Dickeya zeae NCPPB 3532 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 3657522 28 92.9 35 ...........CA............... TACCGAATGTTGAACGGCTGACCGTCATTGCTGCT 3657585 28 92.9 32 ...........CA............... TACCGGGAAATGATGCTACGCCAGCGGATTAA 3657645 28 92.9 32 ...........CA............... AGCGCCGATGCAGTGTTAGTCCACGCCGATGT 3657705 28 92.9 32 ...........CA............... TGGGAATCTCCGCTCAGCTCCGAATTCGACAG 3657765 28 92.9 32 ...........CA............... AGAGAATGCCGCCCGGAGCACGGTCAGTCAGG 3657825 28 100.0 18 ............................ TGGATTTAGCAACGCGCT Deletion [3657871] 3657871 28 100.0 32 ............................ TTATCAAACTCACGGTTATTACTCACTCAACA 3657931 28 92.9 32 ..TC........................ CACCAGCCTTTGCGCTGCAAAACAGGCTCCAG 3657991 28 100.0 32 ............................ TACCTCTCTCCTCGCCATGCAGCGGTGTTTTC 3658051 28 100.0 32 ............................ TACCTCTCTCCTCGCCATGCAGCGGTGTTTTC 3658111 28 100.0 32 ............................ TGACTGTTGTCGATGCCGAGCCTAAAGCGGCC 3658171 28 96.4 32 ...........C................ GCTCAAGCACTGGCCGCGTGTATTGCCCCGTC 3658231 28 96.4 32 ...........C................ AAATGAGTGGCCCCACAGTTCGTTAATCCAAT 3658291 27 75.0 0 ...........CAC......G..-..CG | AG [3658309] ========== ====== ====== ====== ============================ =================================== ================== 14 28 94.7 31 GTGAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGAAATCCCGCCCATGGCGATATCACACTGGTCAGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAGCTGCCATCCGCACGCAGCGAGGTATACGGCTTATAGTCCCCGGTAGTACAGACCTTCAGCACCCCACGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCATATTCACCAATATCGACGTTAACCCTTTTTTTTCGCCCCGTTATAACTCGTTGATTTTCAATGATGACAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCAAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACCCAGCCAGTGGTCAAGGAGAGGCGGCGCTTGCAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACCGTTTATCCCGCACGAAACCACCCACCAACCTGACATACATTCGCCAGTCAATAACAAAGCACCCCAGCTGTTTACCAACAGCCCAAAAACGCTATTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCGTAACCCGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAAAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3664479-3663370 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001858.1 Dickeya zeae NCPPB 3532 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3664478 28 100.0 32 ............................ GCAATGCTGGCAGAGCAAAAAGACCCTGATGG 3664418 28 100.0 32 ............................ ATCCACGGCGGGGGTGTTCGTGAGCGCGGCGT 3664358 28 100.0 32 ............................ GATGACGGAAGGGCATTTCTGTGCACCGTAAG 3664298 28 100.0 32 ............................ CTAATTTGTGATTGCGCACATGCCGCTTTGTC 3664238 28 100.0 32 ............................ ACTAAAAGCAAACCAGTACCTGCTCAACCTGC 3664178 28 100.0 32 ............................ ACAACCCGGTATATGCCACCCTCGGTAAACTC 3664118 28 100.0 32 ............................ AGGCCGTAATTGAAATTAGAGAACGTCCACGC 3664058 28 100.0 32 ............................ CAGGCCGGATATACATATTTTACGTCTGAAAT 3663998 28 100.0 32 ............................ GATCACACGGGCAGCAATACCCAGCATGGTGA 3663938 28 100.0 32 ............................ AACTAGGCGTATGGTTAAACCTCTACGAATTC 3663878 28 100.0 32 ............................ GTGCCAGCAAGAGCGGCGGCAGTCACGTATAC 3663818 28 100.0 32 ............................ GCGCCAAGCTGCGCGATCTGGTCGCTCAGGGT 3663758 28 100.0 32 ............................ ACCAGGTTTTTATGGCCTACCGGTCACAGGTG 3663698 28 89.3 32 ...........CAC.............. GTCCAGCTATCACGCCATGCATAGCGACGGGA 3663638 28 89.3 32 ...........CAC.............. TCTCAATGCAGACACTGCAAATAGCCCACGCC 3663578 28 89.3 32 ...........CAC.............. GGTAAGCGCGAGAAAGTGCAGGCGTTGCGCGG 3663518 28 89.3 32 ...........CAC.............. TCGACGCGGCCTCCATATCAGGTGAAAAAATT 3663458 28 89.3 32 ...........CAC.............. CGGATAAAATCGAAGATAAATTCGATTCGGTT 3663398 27 78.6 0 ...........TAC.........-..CG | GG [3663375] ========== ====== ====== ====== ============================ ================================ ================== 19 28 96.1 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAACGCCTGCGCCGCCGGGCGGTGAGCAAAGGCCGAATGACTGCGGATGAAGCCGCCGCCCGCATTCCCTATACGGTGGAAAAACGCACCTCGCTGCCGTATTTGCCGCTGCGTAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGGGAAAATGGCAGTTTTTCTTTAATAATCAGACGATAAGCGATTATTCGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGTAGCACCCCGGCTGTGTGTCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCAGCAGCGACGCGTTGTACGTTGTGATGGTTTAACCCGGCGATGCAAACACGGCCGCTGGCGATGAGATACACGCCGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3673069-3673819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001858.1 Dickeya zeae NCPPB 3532 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3673069 28 100.0 32 ............................ TTGGTCGTCATGCGGGAACGAGTCACGGAACG 3673129 28 100.0 34 ............................ TTGGCAGTCGCACCCTAAACGGATGTTACGCCAT 3673191 28 100.0 32 ............................ TGACTATTCTCAAAGAATGTGAACCGCATGGC 3673251 28 100.0 33 ............................ AGTGGTGGGTGTTGACGGCTGGTCCCGCATCAT 3673312 28 100.0 32 ............................ TGCGCGGCACCAGCATCACCGCGCTGCCCGAT 3673372 28 100.0 32 ............................ CACGAATGCGGCGAGAAGGATTGCATCACGTT 3673432 28 100.0 32 ............................ TGCTTCGCAACGAAGCGATCAGAAATAACGCA 3673492 28 100.0 32 ............................ GAAAATATAACGTTAAACTACAGTCAGTTAAA 3673552 28 100.0 32 ............................ GTCAGGCTGGGCGGTACCGGGTCGTACAGTAT 3673612 28 100.0 32 ............................ GGCGTCAAGCGCCATTGCTGTTGAGCGCTGCA 3673672 28 100.0 32 ............................ TCTCAGTGGATTAGCCATCTTAGTAAAGAGTT 3673732 28 100.0 32 ............................ TGGCTGTCGATGCAGGATGGATTACGGTTTAT 3673792 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 13 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTTCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCACGCAATGATACGCAGGCTAATAGTTCGCCAGAAACATGTAATACACTGGAAAGTAACGAGAATTAACCTAGCACAGCCCCAACGGGAAAGTGAATGACGCCGAAAAGACTTTCCTTATTTTCATACCCTTTTTTTCCGCTGTCTTTTTCGATACTGAAAAATCAATCAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : AATCAGGTCTTTGTTCTTGAAACCGTCCAGCTCGTTCACTGCCGGATAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAAACAAAAAAGGGCGGACAGTAAGAACAGTGAATGTGTTCACTGCCGGATAGGCAGCTTAGAAAAGAAAGTTACCTCAACCACCTACGGCGGCGTTGTTCACTGCCGGATAGGCAGCTTAGAAAGAGAATGACACCAGAAACGCCAGCTTCGGCAAGTTCACTGCCGGATAGGCAGCTTAGAAATATTTCAGCAACCTGACCATTGTGAGCCTGCCGTTCACTGCCGGATAGGCAGCTTAGAAAACGTCCCCGGCTTGCATCCCGCCCCGTTGTTGTTCACTGTCGGATAGGCAGCTTAGAAAAATTCAGCGACAAGTTCATCGCGGGCCACGTCGTTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 3674012-3675007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001858.1 Dickeya zeae NCPPB 3532 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 3674012 28 92.9 32 ...........GA............... AGAAAGTTACCTCAACCACCTACGGCGGCGTT 3674072 28 92.9 32 ...........GA............... GAGAATGACACCAGAAACGCCAGCTTCGGCAA 3674132 28 92.9 32 ...........GA............... TATTTCAGCAACCTGACCATTGTGAGCCTGCC 3674192 28 92.9 31 ...........GA............... ACGTCCCCGGCTTGCATCCCGCCCCGTTGTT 3674251 28 89.3 32 ........T..GA............... AATTCAGCGACAAGTTCATCGCGGGCCACGTC 3674311 28 89.3 32 ...........GA....T.......... ACCGGGGCCGGGGCGGGTCCAGTGGTCGAGCA 3674371 28 100.0 32 ............................ GCGATGGATGCTGCAATCAAATCGGCGACAGA 3674431 28 100.0 32 ............................ CAACCAGGATTGCCCCAAATGCGCGGGTGAGG 3674491 28 100.0 32 ............................ ATAAAAACGGATCCCGCTTCGCCGTTATCCAC 3674551 28 100.0 32 ............................ ATATGGTTTCAGGCGTGCCATGATGCTGGACT 3674611 28 100.0 32 ............................ CTCAATAACCCACACGCCGCCATCATCACGCG 3674671 28 100.0 32 ............................ AACGACTACACCGTATCAAGTCGCGTTGACTG 3674731 28 100.0 32 ............................ TCTTTGTTCCATTCGATAGCTTTACGGCCATC 3674791 28 100.0 32 ............................ AGTAGCGACAACGCTCGGCATAGCTGAGGGTA 3674851 28 92.9 33 ...........GA............... CGTCGCAGAATATGAATGGGCAAACTGTACGGG 3674912 28 92.9 40 ...........GA............... TGCAGCACCCGAGTTTTCAGAAGTAGGCATCACGTCATGC 3674980 28 92.9 0 ...........GA............... | ========== ====== ====== ====== ============================ ======================================== ================== 17 28 95.8 33 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CTTAGAAAGAAAATATAACGTTAAACTACAGTCAGTTAAAGTTCACTGCCGGATAGGCAGCTTAGAAAGTCAGGCTGGGCGGTACCGGGTCGTACAGTATGTTCACTGCCGGATAGGCAGCTTAGAAAGGCGTCAAGCGCCATTGCTGTTGAGCGCTGCAGTTCACTGCCGGATAGGCAGCTTAGAAATCTCAGTGGATTAGCCATCTTAGTAAAGAGTTGTTCACTGCCGGATAGGCAGCTTAGAAATGGCTGTCGATGCAGGATGGATTACGGTTTATGTTCACTGCCGGATAGGCAGCTTAGAAAATCAGGTCTTTGTTCTTGAAACCGTCCAGCTCGTTCACTGCCGGATAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAAACAAAAAAGGGCGGACAGTAAGAACAGTGAATGT # Right flank : AACAGTTCTGGCGATTAAGGGGATTAAATTAGATTTTCACTGCCGCACAGGAGCGGTTGACGGGTTTACTGGCGTTAAAACTACACTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAACCCTCACTATCTAACGCCCGGAAAAGGGCAACCTGTCAGAACGACGTCCAATCACTATTGCTACCCGCTGCCGCGGCGGCCCGCTTTTCCGGCAGCGCCGGAGATAG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //