Array 1 536037-537529 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKG01000001.1 Salmonella sp. S111-34428 NODE_1_length_716230_cov_155.275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 536037 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 536098 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 536159 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 536220 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 536281 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 536342 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 536403 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 536464 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 536525 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 536586 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 536647 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 536708 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 536769 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 536830 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 536891 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 536952 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 537014 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 537075 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 537136 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 537197 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 537258 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 537319 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 537380 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 537441 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 537502 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 553661-555564 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKG01000001.1 Salmonella sp. S111-34428 NODE_1_length_716230_cov_155.275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 553661 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 553722 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 553783 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 553844 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 553905 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 553966 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 554027 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 554089 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 554150 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 554211 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 554272 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 554333 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 554394 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 554455 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 554516 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 554577 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 554638 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 554699 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 554760 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 554821 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 554883 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 554944 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [554986] 554986 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 555047 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 555108 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 555169 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 555230 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 555291 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 555352 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 555413 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 555474 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 555535 29 96.6 0 A............................ | A [555561] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //