Array 1 3711329-3712523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWZF010000001.1 Parabacteroides gordonii strain FDAARGOS_1522 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3711329 29 100.0 35 ............................. ATTATCATTCAATATAGATTTGACATTCCCTGACG 3711393 29 100.0 37 ............................. TTGCTTTAAACATAAGGTTGACCTCTTTTGAAGATAT 3711459 29 100.0 35 ............................. CTGTAATGTAAATAATCAATAACGGGTTGTACGGC 3711523 29 100.0 34 ............................. AAGCTATTTTGACTTTCAACGTATGATTTAATCT 3711586 29 100.0 37 ............................. CCGGCATGCAAGGCGATTAGAGAAATACGGTGTACAC 3711652 29 100.0 36 ............................. CTATTTGCCCGAGATCATCTAATATGATCGGGTAAT 3711717 29 100.0 36 ............................. GATAGTTCGCTGCTGTCCGGCTTTGCAGTTTAATAA 3711782 29 100.0 35 ............................. CTATTGATCTTTCAAATGATATATAGTCCCGCATT 3711846 29 100.0 39 ............................. TTACTCTCTGTGATCTTAATTAATTCTTCCATGATAATT 3711914 29 100.0 36 ............................. CCAAGTTCGCTCAACTTTTTCCCCGCAAGGGTCAGT 3711979 29 100.0 36 ............................. GAACAAAAGGAGTATAGGAGACTGTTATCTCCTGAG 3712044 29 100.0 36 ............................. GCTATCAATCTCTGATTGAATTTCTGCCTTTCTTGT 3712109 29 100.0 37 ............................. CCTTGAATCTGCCCGCAATAGCAGGAAGTAATACAAG 3712175 29 100.0 34 ............................. CTCATAAGGCATATCAGATGTAGGTCCTTTAGGA 3712238 29 100.0 34 ............................. ATAGACCAGGTTACTTTACCGGCTTCATTGTCTC 3712301 29 100.0 36 ............................. TGTGTTTTTATCTGTTATGCGAGGAGCTCCAGGGGT 3712366 29 100.0 34 ............................. TTACCTGGATTATCTTTTCTCGTATCATAATCAA 3712429 29 100.0 37 ............................. ATGTATCGCGGGAAACGATGGATCCCGTAAAAGCCTT 3712495 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 19 29 100.0 36 GTATTAATTGAACTTAGTAGAATAGAAAT # Left flank : CTTTTAAAATGTATTGGTAATGTATGTGATCTTAGTTTATGATTGTGGAGAAAAACGGGTCGCGAAGATGTTAAAACTTTGTCGGCGTTATTTGAACTGGATCCAGAATTCTGTCTTTGAAGGTGAGATATCCGAAGTTCGTCTAAAGGAGTTGATAATGCAGGCAGAAACCTTTATGGATAAGACCTGCGATAGTATCATTATTTTTAAGAATGCTTCAAAAGTGACAATGGATAAGCAGATTGTAGGTAAAGAATGCAGCTCTATTGATATATTCCTGTAACAATAGATATTTGTCGATCCTGTAATTTTTGAAATATACAGTGGTTGAAAATATGAAATAAGCTCTTTGACTTGTTGATTTATAGCTGTTTATGTGATATGTCGATCTCCAGTGTTTTTTATATTATTGGAGGTCGACATATTTTATCAGGAAAAATGGTTGTTTTTAAATTTTGAACTTATTGATATTTATAAGTTTATGTTTTTGGGACGATAAG # Right flank : TAATTTTGAGCGTTTCGGTTCATCCGAGTACACTATGTATTAATTGAACTAACAAGTCTCAACTAATATAATATAGAATGAATTAAAATATGGGGTTTACAGCCTTAATTGTATCCCTCCCCAATTTTTTGTATCTTTGCCCCTCAAAGTAAAGTACAAAAGGCAATATGATCAGTTATTTACAGATAGACGGACTGACCAAGAGCTTCGGCGATTTGGTTCTTTTTGAGGATATTACATTTGGGATTGCACAAGGCCAGAAGGTGGGGCTTATCGCAAAGAACGGTACAGGTAAAACAACTTTACTGAATATCATTGCCGGGAAGGAGGATTATGATAGCGGGGCGGTTGTGTTCCGTAACGACCTGCGTGTCGGTTATCTGGAGCAGACACCGGTTTATCCCGAAGGACTGACTGTTCTTCAGGCCTGTTTCTATTCCCCGAATGAGACGGTTCGACTGATCGCTGAGTATGAAGAAGCGATGGCCAGTGACGATCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGAACTTAGTAGAATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 4881331-4880974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWZF010000001.1 Parabacteroides gordonii strain FDAARGOS_1522 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 4881330 27 100.0 37 ........................... TAATAATTCCGGATCGGCAAGTGCTATCGCCTGAGGG 4881266 27 100.0 39 ........................... CACAGGTTATCTTCGACACTCTGCATGTATTTTTGTGGT 4881200 27 100.0 38 ........................... ATGGTTACTATCATGCAACGTCTGCATGATGATGAGGG 4881135 27 100.0 41 ........................... TCGATTGTAGCGACAAACGTTTCAGCCAATTTATTTGTGGT 4881067 27 92.6 40 .............T.......A..... CAGATCGGACAGTAATTAGGTTGCAGAAGTTTCCAAAGGT 4881000 27 81.5 0 .....................AA.TCT | ========== ====== ====== ====== =========================== ========================================= ================== 6 27 95.7 39 TTAATTGTACCTTAGTGGTATTTAAAG # Left flank : GTTCCAGGGATGAGGACAAGGCTTAATTGTACCAAGTGAAGATATATAGTTTTTCATTATCTTTGTTTTAACGTAGTAATTAATAGGTAAACAACAATGAACGAACAACAGCAAAATCGTGTAACTTATATCATCTATTGTATCAATGCTTTTGCAGAGCGTTACAAGTTGAGTGCAAAGCAAGCTTTTGCCTATCTGCAACGTTTCAAAGGACTTGTTTTTTTGGATGAATGCTACGAGGCCGAACATCAACTTTCGCTAAGCGATGCTGTTGACGACCTATCTGTTATCTGTAAACGAAATGGAGGAGGATTGGGATGATAACACTTTATCACGGATCGAATGTTGTGATCGAATCTGTTTGCCATTAAAGAATTGTCGATCCCCAGGGTATTTCATACAATTGCAGGTCGACAACTTCAATTAGTAAAAACGAAAGACCAAACAAGGCTAGAAGATATTTAGAGCAGGGAATCTCTATAAATTTGATAGGGGGTTAA # Right flank : TTTTCAAACTTTTTCTAACAGCGAAACTATCTGTTAATCAAAGACAATTCTCTCTTCAAAGGGAGGAGCCATCCTTTATATCAACAAAAAAAGCAATAAATTCATAGGCCAGACCAAATATATGACTATATTTGGGAGAAACTTAGTATACTATTAACTTACTTAGATTATATCTATACCTTATATAATATATAACCTAAATATAATACCAGAATTACTATATGAGAATACATTTATCAACGAGCGCCAACAACGAACTCGTACCTTTCAATTACCAGCAGAAACTTCTTGGTGTATTGCATCGCTGGCTCGGAACAAACGAACTACATGATAAAATATCCTTATACTCCTTCTCATGGTTAAAGGGAGGAAAAAGATACAAAAATGGACTTCATTTTCCTTATGGAGCCAATTGGTTTATCTCTTTTTGTGAGGAGAATTATGTCAAGACCATAATAAATGCAATCATGGACTCACCAGATATGTTTTGCGGAATGAAA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAATTGTACCTTAGTGGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 4882338-4881782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWZF010000001.1 Parabacteroides gordonii strain FDAARGOS_1522 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4882337 30 100.0 35 .............................. GGTGTAACTGTTCCTTTGTTTTTAACAGCATAATA 4882272 30 100.0 36 .............................. CACATACCAGCTGCGCCCCCCAAAGGGCCAACTTGT 4882206 30 100.0 36 .............................. ATTCCGAGCAAGGCAGCTCTGATATGTCGCCTGTAA 4882140 30 100.0 36 .............................. GGACTTTATCCTTTCCTTTATATACGCTGTTTTCTG 4882074 30 100.0 36 .............................. GGGAAGATTGTACAGCCAGCAACTTGGAAATAGGTA 4882008 30 100.0 35 .............................. TAAATAGCGGCAGACCCAGGGGCACGGCCAATCGC 4881943 30 100.0 36 .............................. TCGATCCTACAAAGCCGATAACTTCCCCCTTTCTCA 4881877 29 86.7 37 ..A.....................G-...C ATACTTAAAAACCGGAAGGTTCCAGGGATGAGGACAA 4881811 29 76.7 0 ..C...........A-....AA..A..T.. | G [4881790] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 95.9 36 GGTTTAATTGTACCTTAGTGGTATTTAAAG # Left flank : CCGGTAGGCTTGGGATATCCCAAACCTTCCATCCTTCTCCATCTTGTCAATAACCCCCAGCGCATAAATCACAAACCCATTACGCGCCACCCCTTTCCTGATACGATTAATTTCTTCCATACTCATTTCTTGTTTAAATTGATATTGGCATGGAATATAACAGAAAAAACGGGGGGATAGGTTCGGAAGATACCACTAAGGAACAATTTACTATGCAAATATAAAAAGCACCGGGACAAATTGGAGAATAAAACTTACAGGATATATTAATATAATGTATATTTGGAAGCTTTATTCTGTTTTAGTCGACTATAATGCAGAATAGCTGTCATCAACACAGTAGAAACATGTGATTTGGAGAGTATAAGAGGTAGATGATAGTTGTCGATCCCCAAGGTATTTCATACAATTGAAGGTCGACAACTATCATTGACAGAAAAGAAGGAACAAACAAGGCTAGGAGGTATTTAGAACAGGGGAAATCTATGGTTTCTATAAGG # Right flank : TTTTTCATTATCTTTGTTTTAACGTAGTAATTAATAGGTAAACAACAATGAACGAACAACAGCAAAATCGTGTAACTTATATCATCTATTGTATCAATGCTTTTGCAGAGCGTTACAAGTTGAGTGCAAAGCAAGCTTTTGCCTATCTGCAACGTTTCAAAGGACTTGTTTTTTTGGATGAATGCTACGAGGCCGAACATCAACTTTCGCTAAGCGATGCTGTTGACGACCTATCTGTTATCTGTAAACGAAATGGAGGAGGATTGGGATGATAACACTTTATCACGGATCGAATGTTGTGATCGAATCTGTTTGCCATTAAAGAATTGTCGATCCCCAGGGTATTTCATACAATTGCAGGTCGACAACTTCAATTAGTAAAAACGAAAGACCAAACAAGGCTAGAAGATATTTAGAGCAGGGAATCTCTATAAATTTGATAGGGGGTTAATTAATTGTACCTTAGTGGTATTTAAAGTAATAATTCCGGATCGGCAAGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAATTGTACCTTAGTGGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //