Array 1 39160-39557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000013.1 Cylindrospermum sp. FACHB-282 contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 39160 36 100.0 34 .................................... GTGAAAGAAAAACAAAAAACAACCGAGGAAATAC 39230 36 100.0 35 .................................... TTCACAAGGGAACGACTGACCCTCAACAGAAAAGA 39301 36 100.0 37 .................................... AATGCCGGGCTATCAAAGACCGGATTAATGTTGAACA 39374 36 100.0 37 .................................... AATCCGAAGCGCTCGATTTACGTCGAAAACGACATAA 39447 36 100.0 39 .................................... TTGTCTTTGAATCCCCACGAAGGTGAGGTCTGTCTGATG 39522 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 99.5 37 CTTTACATCACCACTTCCCCTAACGGGGATGGAAAC # Left flank : ACGGTGTACACACAAGTCTCTTTCAATGCAATTTATGGTTGTGCGAACACGCCGATTCAAAACCTCACCCTGGTTCTGCTACGCACAACCTGTCCCTCTCCTTGCCAAGGAGAGGGATGTCCGTCAGGACAGGGTGAGGTTTTTCCAGACTTTTGGGTATGGAAACGAGATTTTAAAAGGGTTTCTGCTTACGTTGATACTCATGAACAATGTTGTCTACGATAATCTGTACCTCACCAAGTTGCAAAAACTTCAGTAAGTCAAATTGACAAAAATAGTAATACGTTATAAGCTTTTATACAAATGTGTTGAAGTAAATCGACACACCCCGCCCGAACCTTGAAAACCGCATAATTCCGTTGAGGTGTGTCGATACTTTGTGCAGTAAGGCTTTTAGGCTGCCAAATTGATAGATTTTTGAAATTGTTTTGCCATTTTCAAGAGGTGTGTCGATTTAGAGGTCTTAAACCCTTTCCCAGTAAGGCTTCCAAAGGTGAACT # Right flank : GACATAATTTTGAATTAGGGAATAGAGAAAACTCAAAAACTATAGGACTTACTTCCTTTGGAGATTCATCCTAATATTGGGCATTTTTAATCGTGTTTTTATGCGTTAGCTGTAGGGTGCGTTCCCTAACGCACCGATTAAGATTTTCAATGAATAAAACCAGCCTACATATTTAGCATTGTTTGTCAATGCGTAAGTCCTAAACTATTCTTAATGCAATAACATCTCAGAAACGGTGCGTTAGGAACGCACCCTACGGGTTAAGATGGTTTTTTCTTCCCTGGTTTGACAAAAGAGGTTAAACGGAAATAGACAACTTTTCTAGTCTTCGTGGTCGTCAAACGGGTCATCGAGTTCTTGAGCAGGAGGCCCAAATGAGGTATAAATGGCCCAGCCGGTTATTGCTACCAGTGCAGCGCCAAAGGAAATGCTAAGAAATATTGCGGGTTCCATAAATTAGGGATAAATTATGATTTCTATTATTAATAGAGTATTACAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATCACCACTTCCCCTAACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 46448-44450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000021.1 Cylindrospermum sp. FACHB-282 contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 46447 37 100.0 37 ..................................... TGCACCCGCTCCAAAAAAGAAACTTTATCAAAGGGGC 46373 37 100.0 35 ..................................... CTGAACCGATACCAACCGTTTATCATAAGCCAGGA 46301 37 100.0 35 ..................................... CAAGGATTATTCGGCAATCTTGGTGAGACTTTAGT 46229 37 100.0 42 ..................................... CCAACGCAACACCAAGAAAGAATCCGATTTGCTATCAAGAAA 46150 37 100.0 37 ..................................... AAGGGCAGTTTATAGAACAAAGTAATCAACCTCAATT 46076 37 100.0 35 ..................................... GCTACCGTAGCGGAAAGAAAAAGAAAATTACAACT 46004 37 100.0 36 ..................................... CAACACAATGGCCCCAATTATTAATTCTTCTTCCTT 45931 37 100.0 36 ..................................... TTAATCAAAAGTCAAAAGTTAAGGAGAATTAAGGAA 45858 37 100.0 36 ..................................... CGGATAGTGCAGAGATATGGACGCCTGGAAGTCTCC 45785 37 100.0 37 ..................................... CAAAGGTTGGATAGTTACTAAAGTAGGTAAAGTAAAT 45711 37 100.0 37 ..................................... ATGATTTTTTTTCCTGATAAGTTAATTTTCCGTACAA 45637 37 100.0 34 ..................................... CATCCAAAACTGAATTATGGACTGTTCGCGATCG 45566 37 100.0 33 ..................................... TTTAGAAACTGTTTTTAAATTAGCTGGGTATCG 45496 37 100.0 32 ..................................... AAAATCTGCAATGAAGATGAAGCCCCTGGCGT 45427 37 100.0 38 ..................................... AACATCGGCGCTACAAGTAGAAGCCCCGGTGCATTTAC 45352 37 100.0 34 ..................................... TGCCTATGGAAATTCGCGCTAGTGGTACGACGCC 45281 37 100.0 35 ..................................... TTTAGACAGCGATCGTAAACCTTGGTTATGTCTAC 45209 37 100.0 35 ..................................... AATTTTCTTCCCCAAAGTCCTGACAACATGCGATT 45137 37 100.0 34 ..................................... GATCTCGCCCCCAGCTTGGGCCGGTTTCAGTTGG 45066 37 100.0 35 ..................................... GTATGAGGTATGGGAGGAATTAATAGTGGCGGATC 44994 37 100.0 34 ..................................... TGTTACCTCTGGTGCTTTGGGAATATATTCCAAA 44923 37 100.0 38 ..................................... TGAAGGACGGTTGAACGTACTCAACAATCCCTCATATT 44848 37 100.0 35 ..................................... ACTTCCTGTATTGAATGCATCTAAAAGGTTGTTAT 44776 37 100.0 36 ..................................... TCACCCATTATCACCTGAGTACCACTTGTGGCGCTT 44703 37 100.0 35 ..................................... AGCAAGGAAAAACCAGCCGATACAATTACCTTAGG 44631 37 100.0 34 ..................................... CCCTATCTCTTTTTCCCAGTCGTTTTTCCAAGCT 44560 37 100.0 34 ..................................... TCGCATGATATTGTAGCTAAAATAGCTATGACAA 44489 37 86.5 0 ..........................AC.....CT.G | GA,T [44453,44456] ========== ====== ====== ====== ===================================== ========================================== ================== 28 37 99.5 36 GTTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TAAATAAGTAGGTGGGCGTAAATAATTCAAGGTTGGTAGTGAGGGCTTTAGCCCTCTCTATCTCCTGTCGGAGACGCTCGGCGAACGAGATGCTACGCGAACAAAGTAGGGCTAAAGCCCTCACTACGAGCAAATTTCAATACTTTTTACTTTGCTTAACATAGTTTGATTTCTTTTCGCCTACTTACTTATCTAAAAACTATTAGTAACTTTTTTGCAAATCCGCTTCTAGAAGGGTTTTTGGGCGTTATTTGCGCGGATGGGTAGGTGTACAAAATCAATGGCGAAAAAAAGTGCCTGTATTCCAATTCCCGTAAGGGTTTCCAGGATTTTTACTGAATTTCGATCCGCGCAAACCTGGAAATGCTTGATAGATAAGGGTTTTAGCGTTTTTTATTCTCACCCCTCTTTTCAAACGATCTCTGGAATGGTATATTTATGATCGATTCGCGCAACTGCACCTTGAAAACTAAATATAGCTTGGGTTCCAGACCCGCGCG # Right flank : TTAGGAAAACTGTCAGAATTAGGATGTCCAGGATTAAAGGATGAACAGGATGAAAACTGGGATTTAATCACCAATTACCTATTACCCGCAACTTGGGTTATTAGGGATTGAAACTGGACGATAATAAATGAGAAACGGTGCATTAGCCAGAGGCATAACGCACCCTACTGGCGTGACAAGGCTAAAATAGTGCAATAGATTTTCGGTCTTTGTTCTTGTTCAATCAAGTTTCGAGCATTTTTCTAAAGCAACATTTAAGGCGTGTCACGCCACTACAAGTTGGATATTTTTTGAATTGGAAATCCCTAAGCGAAGGCAGAAAAATCTAGATTGGGGGGAATATCTTGAATTCGCCCTGGACCTACTGCACGTAATGCTTCGGTGAGGGCAATATCACCAGTGTACAAGGCTTTACCGACAATTACACCTGTGACTCCTTGGGGTTCTAATGCCAACAGACTTAACAAATCGGTGACAGAACTGACGCCACCAGAAGCGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 80160-78726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000021.1 Cylindrospermum sp. FACHB-282 contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 80159 37 100.0 39 ..................................... TCAAGTAATTTTAATGTGATAGCTGTTAATCACCCAGAG 80083 37 100.0 37 ..................................... GGTAAAGCTAAAAATGCTAACACTGGATTTAATTCAA 80009 37 100.0 34 ..................................... ACTGAAAGCAATAGCTACTTTAATACCATCTATA 79938 37 100.0 36 ..................................... AACAGAACTAAATCAGAAACAGCGGAAATCAAAATA 79865 37 100.0 34 ..................................... CCCCCGCTGGCGGTGAGCGTGAGATGACCTATGC 79794 37 100.0 39 ..................................... TTAGAACGGCGTAAATCAAATGATTTTCTAGCACTTTTG 79718 37 100.0 33 ..................................... GCAGCGCATTGTGATTACACTCGCTGGATGATG 79648 37 100.0 39 ..................................... TCATGAAAATATCCCTGATGCGTGGAAAGATAGGGTATT 79572 37 100.0 35 ..................................... TCAGGATCTAATTCGTACCAAGACATCGATCCTAG 79500 37 100.0 40 ..................................... TTATATCCAAGAGGTAAAAACATAATAACTGGTGAGATGT 79423 37 100.0 42 ..................................... ATGTTCGCTGGGTGTCACTGGAAGATTTGCAGAGATGCGGTT 79344 37 100.0 31 ..................................... TGCTTGTAATTCGAGAGCGTCCATAACATTG 79276 37 100.0 41 ..................................... ATTGACAATCAATCATTAGACTCTTTTTGGATAGATCCCTA 79198 37 100.0 33 ..................................... CACAAGCTTTTTCTCTTGCTCAAGCTTTTTCTT 79128 37 100.0 34 ..................................... CTAGCTGGGGTATGCCGTAATCAGCAAAGTTTAT 79057 37 100.0 41 ..................................... ACAAGGTTATGCAGCCAAACTCACCGACTTAGGAATTGCAG 78979 37 100.0 39 ..................................... TTAATGCTTGGGTGTCTGCAACTGGGGAGACTAATGCTA 78903 37 100.0 33 ..................................... CGTTCCGCTGTAGCCAGCGAAACCAAAAATCTG 78833 37 100.0 34 ..................................... GAAGCTGAAGCACCGTGGCTCAAGGATTTTAAAG 78762 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 99.9 37 GTTGCAATTCATCCAAATCCCTATTAGGGATTGAAAC # Left flank : TATGGCGGCGATCGCAGCTGGTACAGATTCCCTAATGATTGAAGTGCACCCCAACCCTGCTAAAGCTTTATCTGACGGGCCACAATCTTTGACACCAGACGGTTTCGATAAGTTGATGCCAGAATTAGCAGTAATTGCTAAAGCGTTGGGACGTTGGCAGCAACCAGCCGTTGCCTTAGTTTAAGCCTTTCTTCTCGGAGGGGAGAAGTTTTGAATTTTTCCCCCTTATAGCTGGATTTCAGGATGCTAGTTGCGCGGATGGGTAGGTGTAGAATTTCGATGCTGGAAAAAAATGCTTGTATCTCAATCACTGTAAGGGTTTCAGCCTCAGATCGCCCAATTTCGATCCGCGCAATCGCTGAAAGCCTTAACCTAAAAGGGTTTCAGCCTTTTTTTTCTGACCCCTATTTTCAAACCAACGGCTGTAATGGTATATTGATGATCGATCCGCGCAACCGCACCTTGAAAACCAAATATGGTAAGCCTTCCAGACCCCAGCG # Right flank : ATTTTAGCGGTCGAGTATAAATTGGCAGAAGTAGACAAATACAGCGCATTTCATCTGAGTGAAATACACAAGGGCAGGCAAGATGCCTACCCTACAAGAGTTTTATTATTTATATTTGTACCTCATTTACCTGCAATTTGCTGTATTTGTAATGCAGGGGTAGTACATTGTCGTGCCCCTGCATTTTTGAATCGTCTAACGTCGTCTGCTGCCAAAACCAGATGAGCGGCGGCTGGAAGAACGGCCCCCACTACCAAAACCACTACCAGAATTGCGTCTAGTTGAACTAGAGTTACCAGAAGGTCTGAGTGTGCTGCTACCATAGCCGGAACCAGTGGCGCGGCTACCGGTATTGGTGGTTGGTGCAGTCTGGACAGTTGAACTTCCCGGATATGATCTTCTAATGGAGCCTGTACTGCGGAAAGCAGTACGATTCCTCACAGCTGCGGGTGGTGCATTGTAGCGAGTTTGGTATCTTTCAACTGCTTGACCATAGTTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTCATCCAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 25043-24707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000002.1 Cylindrospermum sp. FACHB-282 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 25042 37 97.3 37 ...............T..................... AAGCAGTCCACACCCGGCACTGATACTTTTAGCAACT 24968 37 100.0 40 ..................................... CGGATAACTCCCCACTTCTCCGGAGCTCAGGTATGAGTCG 24891 37 100.0 38 ..................................... TCTCCATCTATAACACTCACCACCAACCAGTTTTCAGA 24816 37 100.0 36 ..................................... TAGCCAACCCCAAAGAAAACTAATGAGACATCCTTA 24743 37 89.2 0 ............................A.A.A...G | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 97.3 38 CTTTCCGCTAACTAACTCCCCGCAAGGGGATTGAAAC # Left flank : AATCGGTAATTGGTAATTGGTAATTGGTAATTGGTAATTGGTAATTGGTAATTGGTAATTGCGAACACAGGAAACAAAACCTCACCCTGGTTCTGCTACGCACAACCTGTCCCTCTCCTTCCGAAGGAGAGGGATGTCCGTTAGGACAGGGTGAGGTTTTTCAAGATGTTTGGGTAATCGAATAACTTGTGTGTACACGGTAGATTAAAAAGGCTGGGGGAATCTTATTTGTTTCAACGTTATGGGGAATTGGTATGAGGTAATAAAAAATACTTGACAACCTGGGAGCAAAGGTTTTATTTTTATAGAAATTGGCAAACCAAAGCGGGGGCAAAAACCCTGGGGGGTTCGCCAAATCTTCAGAACCTTGAAAATTCAATAGTTCCAGCGTTTCAATAGTTTCAATCGGCAGTTTTTTGGAGCCTGAAATCGATCTAAAAATAGAGGTCTGCCAAAATCCTGTCTAGAATCTTTATCCAGTTTGATTTTCAGGTCGCGGA # Right flank : ATGGTTTTGTTACCGTTTTTACCAACATTTCAGTTAGATGGCTGCTTGGTGCTGAACTGGGGTAATCTGAAACTTGTAACTTTTATCACAGGAAGAACGGTTTGTGAAGATGCAGATCAAGAAATTCCTCGTAGCAGCTTCCTTATTAATAAAATGATAGACTTTACAACCATGAATGGGAAAAACACGGTACTTGCTCAGGTAAAACCCCTACAGAATACCTAGCATTAAGCAAACAGTTAAAAGATTCCGTCGCCATTCCCACAGCATATAATCGCCCCGCTAAACCCTTCCGCACCACCATCAAAGACTTGAAAAGTTCTTTTGTGAGAGCTAACAGTAAATTTACTGTTGACCAAATAGCACCTTACTGTTCCGATTCCGGCAGGTTTTTGCAAGAAGTGTTCTTTTGCTTTGCTAAAGACGGTAAAGCAGGGGCTTGTAGTGCAGAAATTTTGCAGCGTTCTCAAACAAGCTGTGGTCAGGCAAATTTTTTGGTG # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGCTAACTAACTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 19115-20989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000024.1 Cylindrospermum sp. FACHB-282 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 19115 37 100.0 43 ..................................... AGGATTGCAATAAAGCAGAAATGCCTTCTCAATCTCATTCCAC 19195 37 100.0 36 ..................................... CCGTACAATCCCAACGCTGCCAATATTTATGGGGTT 19268 37 100.0 36 ..................................... ACCTAAGCTTACGGATATAATCGCGGGCTTTAAATT 19341 37 100.0 33 ..................................... CATTGCTCTCTATCGCTTCCTTCGGAGGATTCA 19411 37 100.0 34 ..................................... TTACTGCCACGTCCTGATCCCATCTGGATACTGT 19482 37 100.0 40 ..................................... TACTTAATACTATCGAATGCGAAATTTATAAAATATAATA 19559 37 100.0 35 ..................................... ACATTACCCCAAAGCTATGTTACTGTATTCAGAGA 19631 37 100.0 33 ..................................... AGAAAAGCCAGGTAAAGAAAAGATTGCGCTTTT 19701 37 100.0 35 ..................................... GCTTTCCTTTTTGTTGGCAAAGCGTATATATACTG 19773 37 100.0 41 ..................................... GATCCTAAAAGCACGCGAACTTCACCGGCGTTAACTTTATC 19851 37 100.0 36 ..................................... GAACTTTTTTAAGCGCTTCTATGTTTGCGCTTAAAT 19924 37 100.0 41 ..................................... TAATGATAGTAATTCTGTACAGACAGCTAAAGTATGTAATG 20002 37 100.0 34 ..................................... ATCGTGCAACTATTACCGATGTAAGGGATCACAG 20073 37 100.0 39 ..................................... GAACCCCTTCACTCGACAATAACGACGGACAGCGGCATC 20149 37 100.0 31 ..................................... CTCAAAATTATCAAAGCGTGTATATAAAATT 20217 37 100.0 38 ..................................... GTCGCAGCAGGATTAAATCGGTGGTTGCCTCTGTCCGC 20292 37 100.0 39 ..................................... GTTAGCCGGAAACTTCGGCAATCGAAAAGGCACAGGGAT 20368 37 100.0 38 ..................................... TGGAATTGCATCTATTAGCACCCGAATTTGTTGCTTAT 20443 37 100.0 39 ..................................... TCGTTCACTATCCGATATTTCCAATGGGAAGGTAGGATA 20519 37 100.0 36 ..................................... TCTAGCTGCACCTTTGCACCGTGCCCCCAAAACTCA 20592 37 100.0 35 ..................................... GCATTAAAAGCGAATGTAGGCTCTTCCAACCCCAA 20664 37 100.0 37 ..................................... GGTAAAGCCAAAAAGGCAAGTGCCGGATTTGCTTCAA 20738 37 100.0 35 ..................................... TGATAAACTACCTCTAGGTACAAAACCAGAATTAG 20810 37 100.0 38 ..................................... AGCAAAACGGGTTTGCTTTAAAGCACTTCTTGATTCAA 20885 37 100.0 31 ..................................... TACTTGGTAAAACTTATGGCAAATCCAAAGG 20953 37 73.0 0 ...................G......ACCCAA.TTG. | ========== ====== ====== ====== ===================================== =========================================== ================== 26 37 99.0 37 GTTACAATTCGCCCAAATCCCTATTAGGGATTGAAAC # Left flank : CGGCAATAAAGATGCCACATCTTGGGCATTTGCGCCCCAACCGTGTAAAGCGACGATTAAGCCTTCAGGTTCTTGTCCTTTTGGTGGCGAAACCTTAATAAAATCTAAAGTTTTAGTCATGAGTCATTACGTGAAAATCAAGGTTGAGAAATATAACCTTAATGCAAATTATCCAAGGACGTGAGCATAAATTTCACTTTTCTTAACTGCTTATTTAAAAGCCGCTTCTAGCAAGGTTTCTGGGCGATAAATGCGCGGATGGGTAGGTGTAGAAATTCGATGGCAAAAAAAAATGCTTGTATCTCAATCACTGTAAGGGTTTCAGCCTCTAATTGCTCAATTTCGATCCGCGCGATCTCTGAAAGCCTTAGCATAAAAGGGTTTCAGCCTTTTTTTTCAGCCCCCTATTTTCAAACCAACGGCTGTAATGGTATATTGATGATCGATCCGCGCAACCGCACCTTGAAAACTAAATATGGTAAAGGTTCCAGATGCCAGGG # Right flank : CGGGTAATAGATAATGGGTAATAGGTAATGGGTGATTAAATCCCAGTTTTCATCCTGTTCATCCTTTAATCCTGGACATCCTGATTCTGACAGTTTTCCTAACTATAGGAATAATATTTGATTCCTGAAATTATTTGCGTAGGCAGGCAAGAGGCACTCATGCAAGAGGCAAAGGGATTCTAGACGATTAAGGTGTACCGAGTTTTTTTCAAAAATCAAATATGAGTCCTATAGCAACTTACGTTATTAGGGATTGAAACGCGGTTGTTGGTTAAAATTAACCAAAACCCTAGGAAAAATGAAAATGAGGTTTTGAATATGGTTGCTTCCCCGCAAATTTACATCACCCCAGAAGAATACTTAGAATTGGAAGAAAACAGCCCCATCAAACATGAATATATTGACGGGTATATCTACGCAATGGCTGGGGCACTTGAAGCTCATGTTACCATCGCTGGAAACCTATTCGCCTTGCTGCGTAATCATGTACGTGGTTCTGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTCGCCCAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 40973-41230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000040.1 Cylindrospermum sp. FACHB-282 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 40973 35 97.1 41 .....................T............. TCTCATCTCATTATGCGGACGCGATGACAGTTGTCTGCGTG 41049 35 100.0 37 ................................... CACAGCTACGGGCAACGGCAAAGTCACTGTGGAAGGG 41121 35 100.0 40 ................................... TCCTCATTCAACAGGCTACAGAAAGTTGGATGATGAAAGG 41196 35 97.1 0 ...T............................... | ========== ====== ====== ====== =================================== ========================================= ================== 4 35 98.6 40 TTTCCATCCCCGTTAGGGGAAGTTGGTTTGTAAAG # Left flank : CAAACCATTTTATCAGCCCAAGACGGTGAAAGCGTTGAAGGCAGGGAAAAACTGATTCGCTATTACCTCGAAGACAAAAGTATTAATGCTTTCATCTGGCATCGTTTAGCCGAAAAATACCCAACGCAGCTGGAAAAAGTCTTACAAACTTTTCTCCAACGTCCAGATTTTCGCCTTGCCGAAGAATTAGACGCACTACTACAAGAATATCATAAACCCATTGAACCAGAGTTACCAGAAATTGCCAGTGTCCCGGAACATCTGCACAATTTATTTCAAGAAGCTATCGCCGAGGTTAACAAATCTCAGTCTAAAGCTAAGGCACAGAAAAAGCCAGCCAAGGGTTTTCGCTAAATCCAACCTAAACCCTTAACCGTTCAGGGCGTTTTGGGCGGGCGAGACGCCCACCCCACAAAAGCTAGTAGGGTGCGTTCCTAACGCACCGTCTCCGAGATATTGCTGCATTAACTTTTCCCTATCCCCTAATTCAAAATTCTGCT # Right flank : GAGTTCACCTTTGGAAGGCTTACTAGGAGCGGGTTTCAGACCCCTAAATCGACGCATGTTTTAAAAATAGGAAAACATTTTCAAAAATCTGCCAATTGTGCAGCCTGAAAGCCTTACTACACAAGGCATCGACGCATCTCAACGGAATTATGCGGTTTTCAAGGTTCGGAGGAGATGCGTCGATTGAATTCGATACACTGTATAAAAGCTTATAAGGTATTACTATTTTTGTCAATTTGATTTACTGAAGTTTTCCTTTATTTAAACCAAATTTATCGTAGGGAAACAGCAGTGCTGTGTCCCTAGTATTTAGCAGCGGAAAGTAGCATTTATCCTGCAATATGGGATCGGGTAATATGGAGCGTATAATAAAAAACAGTACTTACTATAACTAGATGTAGGCAATTTAACTAGGGTATGTCTTCCACAATCGACAATCAAAAAAGAATCTATGCGTGAAATTAAGCCTTGGACTACTAGCTTAGTAGTCGTAATATCTA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCATCCCCGTTAGGGGAAGTTGGTTTGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 123118-124159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000005.1 Cylindrospermum sp. FACHB-282 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 123118 37 100.0 33 ..................................... GGTGCTGATGGTAGAGATTGCTTGATTGGCCCA 123188 37 100.0 35 ..................................... ATTCTTATACCAAAGCAGATCAAAAACAACTTGTG 123260 37 100.0 32 ..................................... ATTGTAGTAACTTCTAGGATTTTTCTATTTTT 123329 37 100.0 32 ..................................... CCCTTGTTTTGGCAGATAGTTGATCTTCCAAG 123398 37 100.0 35 ..................................... CAGAGACACGACATCATCCCTATTCAAGCTAAATC 123470 37 100.0 34 ..................................... AATTGCCGCAAGATATTCAAAATGAATTAGATAA 123541 37 100.0 34 ..................................... TTTTGAGCGCTTCTCCCATTTCTCAGATTTCTCC 123612 37 100.0 37 ..................................... TTTAGGTATTAAATTCCTCTCCACTTTCTTAACCAGA 123686 37 100.0 33 ..................................... CTTTCCTCTTCTAACCCACACCAAAAGGAAGAT 123756 37 100.0 42 ..................................... TAGAGTTAAACTCATAAATCCCCTCTTTTAGTGAATCAATTA 123835 37 100.0 36 ..................................... ACCATGGAGTTCACAGGAACCGTGCCCACTGGCTAT 123908 37 100.0 33 ..................................... GAAGTGTCTTGTGAGTCGGCTCATGTATGCGCA 123978 37 100.0 35 ..................................... GGGGCCATTCATAATATGGAAGCCTCCCTAAACTT 124050 37 100.0 36 ..................................... AATTTCATCATATTCCAGGCTGTTAGCCGCATCAAA 124123 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 99.8 35 GTTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TCATTCGGTTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTGTTTGAGTGCGATTTGACTGCTACCCAGTATGCTAAACTGCGATCGCGTTTGGTTAAACTAATTAAACCAGATACTGACAGCGTTCGTTTTTACTTTCTCTGCGCCTGTTGTCAGGGAAAAGTTGAACGCATTGGCGGTGAACAACCACGGGACGAAACTATCTTTTTTGCAGAGTCCCCTTCTAGCTAGGGTTTTGGACGTTTTTTGCGCGGATGGGTGGGTGTAGAAATTTGATGGTCGAAAAAAACGCTTGTATCCCAACCCCAGCAAGGTTTTCGAGCCATTTTCACCCAAAATCGATCCGCGCAAAGTCTGAAAAGCTTACCGCACAAGGGTTTCCGCCTTTTTATTTTCTTCCCTCTTTTCAAACCAACGGCTGGAATGGTATATTTATGATCGATTCGCGCAACTGCACCTTGAAAACTAAATATGGTAAGGCTTCCAGACCCCAGCG # Right flank : AAATGTGGAATATATGGAGTAAATAGAACCAGAGCCGCATTCCCCAGGCAAAATTAAGTATTACTACGGAACCAAAAACTGCGGTAAGCTGGAGGCATGAATTACGAAACAGCTCGCAAACTCCTCATAGACCAGACAAAAACCGAGGAAAACCCAGATGCCCTGTTAAACCGTTTAAAACAGGGAAGATCCCCGGTTCCAGGTCAGATTACCTCGATTTTGTTAGCGTTGAAAGTCGTGTTTGAAGCCCTTAAAGAAACCCCTAGCCTAGATAGAGAACTGGCATTTGCCCTCTATCAGTTAGGTGTTAAGGCTCAACAGCTGTTTGTCGCAGGGCACAAAATAGGCATTGATTGGCCACCACTGCTAAAAGAAGATTTGCAGCGAATTTCCCTAGCCTCAGAGAGCATCTTTTCTGGAACATGGCAAACCCTACCTTCGGGAGGCAAACTGATAAATGAAGTTTGAAGGTTGAAATTGACATCTTTTCAGCCTTCAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 18271-17210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000042.1 Cylindrospermum sp. FACHB-282 contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 18270 37 100.0 34 ..................................... TATGTTAACCCCCCTACGCCATCGAAAAAATGGG 18199 37 100.0 36 ..................................... ACGTGATAGCGGTAGTATCCGAGAAAGTGGAATCAA 18126 37 100.0 36 ..................................... AGGGTGCAAGGAAATAATTGATCAATTTGATCAATA 18053 37 100.0 39 ..................................... TTTGACGGCGATCCATCTTCTTTGCACCAAGGCGAAAAT 17977 37 100.0 35 ..................................... AAAGGAATACCTTCGACAATATATTGGTTGGCGTA 17905 37 100.0 39 ..................................... GTAGATATTTACTTTAATCTCCTGACCGTTCAAAACTTT 17829 37 100.0 37 ..................................... GAATGTCTGCTACATAAAGATCCTGTGACTGCCTCTC 17755 37 100.0 35 ..................................... GATTGATAAGTAAACTTGCACAAACCTATGGTAAT 17683 37 100.0 42 ..................................... TTCTTCCTCTTCACCCTTTAAAATTTGCTGAACTTGTGCATC 17604 37 100.0 33 ..................................... TAATTTATTGGGGACTGATTGCATTTTTCACAC 17534 37 100.0 37 ..................................... TAGCTTGCACTAATTCCTTATTTGCAATCCTGGCTTG 17460 37 100.0 37 ..................................... TTACTTGCGTTTGACACAGTTCGGCACTCATCAAAGG 17386 37 100.0 33 ..................................... TTCGGGCTACATGGTATTCCATCAATAATCATT 17316 37 100.0 33 ..................................... CATCAAATCAAGAAATTTTCTTTACACCTCGAA 17246 37 75.7 0 ..........................ACCCAA.TTG. | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 98.4 36 GTTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CATATTTATTGCAGGTTGACTGCGATACTGAAAATGGCGGTCTGAAAATCAACGAAAATTTCTATGTTGACTTTGGTAAAGAACCAGCAGGCCCATCTCGCGCTCATGAAATGCGCTATCCTGGCGGTGATTGCACCTCTGATATTTGGATTTGACTTGGGGGCTAGAAGATTTTTGTTTTACCAGAATCTAGAAAACCTACTGGTGAACTTCTCCCCACCCCCTTTTTAGCTAGATTTCTGGATGCTAGTTGCGCGGATGGGTAGGTGTACAAATTTGATCACTGAAAAAAACGCCTGTATCTCAATGACTGTAAGCATTTCAGCCTCTTATCACCCAATTTCGATCCGCGCAAACTCTGAAAGGCTTACAATAAAAGGGTTTCCGCCTTTTTTTTCTTTGTCCCTCTTTTCAACCAACGGCTGGAATGGTATATTAATGATCGATTCGCGCAACTGCACCTTGAAAACTAAATATAGTATGGGTTCCAGACCCCCGCG # Right flank : GGATAATAGGTAATGGGCAATAGGTAATTGGTGATTAAATCCCAGCTTTCATCCTGTTCATCCTTTAATCCTGGACATCCTGATGCTGACAGTTTTCCTAACTAGCAACTTACGTTATTAGGGATTGAAACAAAATCTGCCGCCGTAGTTCCCCATCTGTCTACAGGGTGAAGAATTACGGCGATTGGTGAAAAAGGTTAATTTTAAACCTTAGCCGGCGCAACAGGCAAACTCACCTTCAACCGCTTCAACATCGATTCCCGCGCTTGCATTGCCAAAGTGTCATCTAACTGTGACAAAGTAATAGCCTGCTGATACTTTAGGCGCAAACCAGTTTGAATTAACCAGTCAGCGACAAAAGGATTTTTTGGTAACAATGGCCCGTGGGAATAAGTGGCGATCGCATTTTGATAAAAAGCACCCTCTGTCCCATCCTCACCATTATTCCCCAAACCATACACCACACGCCCCAAAGCTTCCACCTTCCCTAGCTTTGTACG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 32442-32197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000061.1 Cylindrospermum sp. FACHB-282 contig61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 32441 35 100.0 37 ................................... ATCCCAAGCCGGCGAAGGATACTCCTCTTTTTTCGGT 32369 35 100.0 33 ................................... CGCCAGACCTGCGGTTGCGCTCACCATTGCTGG 32301 35 88.6 35 ..TT...AG.......................... TCAAAAATTGCAAGGGACAAGCTATATGTGTAGGT 32231 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 4 35 97.2 35 TTCAAAAGCCCTCTCCATAGGTGGTGGGTTGAAAG # Left flank : TGTTCCGCACAGGAAAAGGACTATTTATTAACGCTGATTTAAATGGTGCAGCGAATATACTTCGCAAGGTAGAGACACAATTAGGACTCGTCCTAGTCAAGGTCTGTAGGCAAGTTTTGACCCTTGCTACCAGATTTCGTATCTGGGAAACCAAAACTAAAAAGCGAAGTGGTACGGCTTCAGCCTACCACGTAGTATCAGTTTAGAATCCCCGTGTCTTTAGACCGGGGAGAGGTCAATTTACAACAAAGTAAGGGTACGGGTCTACCGTCACGGCGGCTACTGAACTACCACCCCCTAATTTTCATTTTTGGCAAATCAAAGCGGGGTCAAAATCCCTGGGGGTCTGCCAAATCTTTAAAACTCTTGTCTTGACTGACTTTCATGATTTGGAAGGTCAATTCAACTTGACTTATTGGCAGTGGAAAATAAGTATTTAACTACATCTGCCAAAATTGCCTGTAGAAACCAGTCAAGATAAGCAATTTGACGGGAGCGGT # Right flank : TTTGTTCTAAACCAGGTAACTCTAGCCTTTTATAAAATTTCACTCTGGCATCTTTTTATAGTAAAATTATTTACTAGGGTGGTTTGAAAGGAGTGCTGCGATCGCACCATACAATGCAGCAGCTTTAAGGTGGTGCAACTTTTTTTTTAGGTGAAAGCTTCAAAGGTAAAAATTAAAATATTCTAGTTCGACTGTGAATGAACCACTTCAGGGATATATCTAAGCTTGATGTAAAGTTTTGAACTAATGCGAGTTTGCTTAAACAATTTTTAACTAAATGGTCTTGACATTGGTATACAGTTCAAGGCAAGGGTTTATTTTTCTGGGTAAGGTTGTATATTTTTTTGGACAATAATTCTTTAAAACTGGTTTCAACTCTGGACAATAATTCTTTAAAACTAGATTAATGACTGAAAGCATTGAAAATAGGTAACTTATGTCCATTAGATTTGTAAAATTGGACAATAATTCTTTAAAACTGACAATAATTCTTTAATGTA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAAAAGCCCTCTCCATAGGTGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8348-6719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000006.1 Cylindrospermum sp. FACHB-282 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 8347 37 100.0 36 ..................................... GGCACGCCGACGGGTTTGTAAGAAATTCTGAAGTAA 8274 37 100.0 36 ..................................... ACTACACCAAAAGCAACAAGAGAAGTTAGCTAGCTT 8201 37 100.0 38 ..................................... AACTGGATGAACAAACTACCTGGTATAGCTTTGATCTC 8126 37 100.0 36 ..................................... CAAGCATCTCATGTTGTGGATGCGAAAGATAAAAGT 8053 37 100.0 32 ..................................... CTAGCAAATGTTACATGATCAGATAGAAAAAA 7984 37 100.0 38 ..................................... GTACGACAATACACGTATACATCCAATCAAGGTACAGC 7909 37 100.0 37 ..................................... AACAAAGTAAGCTTTTGCTTCCTTGCTAGCGTTGATC 7835 37 100.0 36 ..................................... CCTTGGACTCCAAGACTGGCAACTAACTTTTTACTG 7762 37 100.0 33 ..................................... TTATCCAATCCTTTCAATTTCAATGCATCTATG 7692 37 100.0 35 ..................................... GAACTTCTCCCAGAAATGCCGCCAGAGCTAGAGCA 7620 37 100.0 33 ..................................... GGATGCGATCGCCCACCAACAAAGCTTCTAATG 7550 37 100.0 33 ..................................... TCTGCATTCAGTAAAATAGAAAGTGTAATTTCA 7480 37 97.3 34 ....................................T AATTCTTCACAAAGCTGGTAGGTGGCTTTCTCTA 7409 37 100.0 41 ..................................... ATCATAGACCCGTCTGTAGGTGTTGGGCACGGCAGTGAAAT 7331 37 100.0 36 ..................................... ATTATAATAGCTAGGTTTTAAAGAAAACTTATGGGG 7258 37 100.0 35 ..................................... GGACATTAGCTCGGCATGAGTTTGTGATACACAAA 7186 37 100.0 33 ..................................... CCAGCCACCTTTGAAGTTATTGTCTCGATCAAA 7116 37 100.0 37 ..................................... GCTAGCACAACTTCTCTTGCTACTGTTTCTGGTACTA 7042 37 100.0 34 ..................................... TTTGATTGCCAAAATTGCATTGGGAACATAGAAA 6971 37 100.0 35 ..................................... ATATTTTATAGGCGCAGGTAACTCACCTTTAGCAT 6899 37 100.0 34 ..................................... AAAATAGAGGTCTTCTAGGCTGTAGTTAGGCGGC 6828 37 89.2 36 ...........CT.......T.......C........ CCTTTAAACTCTATCCAAAGGTGGGTTAATGGATGA 6755 37 91.9 0 ...........CT..........C............. | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 99.1 35 CTTGCAAAACATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TGGGAATTAAGGCTTTGGATGTTAACCCAGCTTTAGCTAAGGGTTTGAATGTCCAAAATCATCGCTTGGTGCATCCGGCTGTGCAAGAGGTTTTTCCTGATTTGGTGAGTTAACTATATATAATGTAGGGGCAATTGATCAATTGCCCCCAGGGTAAATCAAGGCTTTTACGTCATTTTTGCGTAAGTTTTGGGTATGTGGTTAACTATTCGCTAGTAACTAACTCTTTTTGACGGTGGTAGTGGTCTAAAATCAATCTAGTAGTCTGTTGGTTGCGCGGATGGGTAGGTGTAGAAAATGAGGGGTGAAAAAAAATGGCTGTATCTCTTTCTGTGCAAAGCTTTGAGGGCTATCGGACTGAAAATCGATCCGCGCACCTTATGGGGACTGGGTTTCAGCGTTTTTTATGTTGTGCGATCGCTCTGGAATGTGGTATGATTTACCCATCCGCGCAAATGAACCTTGAAAACCAAATACAATCAGGCTTCCAGACCCCAGCC # Right flank : TGTAATGTATTAACTGTCCTTGCGTCTCTTTCAACAGCGCACCAGCACAGCGGAACATTGTTAAAATCATCCCTTAAGTTTTTTAACTTTCCTTGTGTCTCTTTCTCATTCGTGATAACTTACTTACGTAATTTATACCTACATAGAGAAAAATATGATGGCAATTGGAAAACGATTGATATCAGGATTTTTGGTACTGGTTGTAAGTAGCTTGATGTTCTTGACATCTCCAGCTATTGCTGCTACCTCATCAGATGTGCTAACGCTTACTCCAGAAAATTTTGAAACTGAAGTAGTGAAATCCGACAAGCCTGTAGTTGTAATTTTGATATCTGACACAACACGTGAAGCCTTAGAAGTTTCCTTAGACAAGGTAAAATCAGAAGCTCAAACCACTTTTGGTGATAAATACAAAATAGTTTTGGGCACCGTTGAAGCTAATCCAGAAACTTACTATCAAACCCCTGTTCCACGAATATATCCGCCTATTTCTACGGCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAAAACATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 1022-521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000069.1 Cylindrospermum sp. FACHB-282 contig69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 1021 36 100.0 39 .................................... CCGCCTATGGCCACCGCGGCGTAGAGTAGCGCTGTTTGC 946 36 97.2 36 .C.................................. ATTGTTAGTGCCTCTAGCGATTCGAGTACTAAAGAA 874 36 100.0 44 .................................... TTGCCGGGGCGAAAAACGTTCCAGCTTTTCCTCTTTACTGCAAT 794 36 100.0 49 .................................... TAGGCAATCAGTCCCACCCCCGCCATCTCAAGCAGCGATGGCCGCGCCT 709 36 100.0 36 .................................... TCATGGTTCACATTGTCGTACTCCCACCGGGGAAGT 637 36 100.0 45 .................................... ACTTACCCATATCGGATAAGTGGCCTTCCCCGCACTCGCCACCAA 556 36 97.2 0 ..............G..................... | ========== ====== ====== ====== ==================================== ================================================= ================== 7 36 99.2 42 GTCGCTTCTATTCTTAGAAGTGGAATTAATGGAAAC # Left flank : TATTGGAAACAGCGCCTTTGCAATCGCATGGACACTCCCACCAAGCTCACCCCCACCGATTGGGTTAAATCGGAATTATTGGAAACACGGAGAAATCCTCTCCCTCTAGGTATTTTTGTATCACCCCACCGATTGGGTTAAATCGGAATTATTGGCAACACTCGAAAGTCAATCCCAAAGAAGCCCTGCACGCCCACCGATTGGGTTAAATCGGAATTATTGGAAACTTGACCAGGAAGTCCAGGATGAAAGCCTTGCGCAGGCCCCACCGATTGGGTCAAATCGGAATTATTGGAAACTTTTTGCACATTTGACCCCGTTGCGGCAGGGTCAGCAAAAGCTGGAAACCGTGATTATCTCGTTGACCCCGCCGATGTCTCTCTCTGACAGGGTTTCAGGGTTTTTCTACCTCTAACTGACGCAGATAAATTCTGTGTGCATAGACCCCGTCGCAAACGGCATCTGGACATTAGGCACAGTCAGGGCTTAAAGTAGGAGGG # Right flank : AAACAGAACCAAAAAGCTATTATCACGGAAGGCATTCCGTCACTGTCACTTCTATTCTGAGAAGATTGTAGGGTGCGTCAGACTCGATAAATCTGGCAAATAAACAGATTTTTGACATCTGACGCACCCTACTAATGTGCCAGTTGCGTAAGTCCTGGTCTTGTTAGCTAAGGGAGGGTATTTTTATCCGCGCTATAGTTGCATTGGACTATTCATCATCATCTAGTTCATCGTCTTCATCAAAATCATCATCGTCTAACTCAGCTTCCAAATCGTCGGTTTCATCGAAGAAATCGTCATCTTCATCATCAATCACTTGAATTTTCCTTATTATGGTGAGCCATCACCATCAGAAGCACCATATATTTATAGAAGTCAAGCTAAAAGTGGCACTTGTTTTTTTATGCTTACAAGAAACAGACGGGAGTTTGAAAGCCCCGGAGGAACAGGCGCACAGCGCCATACTCCGTACTTCAGACCGGGGATGAAAAACGACTCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTATTCTTAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1625-1223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000069.1 Cylindrospermum sp. FACHB-282 contig69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1624 36 100.0 41 .................................... GTTTCCGGCTACAGCCAGCGTATGGCTGAAATGTGATTTGA 1547 36 100.0 40 .................................... AGCGCCTTTGCAATCGCATGGACACTCCCACCAAGCTCAC 1471 36 100.0 37 .................................... ACGGAGAAATCCTCTCCCTCTAGGTATTTTTGTATCA 1398 36 97.2 32 ................................C... ACTCGAAAGTCAATCCCAAAGAAGCCCTGCAC 1330 36 97.2 36 G................................... TTGACCAGGAAGTCCAGGATGAAAGCCTTGCGCAGG 1258 36 97.2 0 ...............C.................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 98.6 37 CCCCACCGATTGGGTTAAATCGGAATTATTGGAAAC # Left flank : TAAGCAAGACAAGAAAAATACAAATCTAGTTTTGCAAACTTATCAAGATTATGTAAAAAGACATTTTATCAAAGTTTTAAAGTTATTTGGAATTTGGAAAGAAGCTACAATTGAGAATCAATTGGAGAAACAATTAAATAATATAGCTAATTTACTCCTTTAATTTGGTATTGTTCCGTGTTTACTTATCAGCAAAGCCTTGGTACGCTTACTAATTAATTACAGTACAGTAGCTTTTGTAATTATGTGCGATCGCCAAACCACGAACCCTGATAAAATAAGGATACAAAGACAAATCTTGTTATGAGTTTATGATTCATCGACACAGCCCGGCAAATCGCTGAAACCCTATATTTTCCGTTGAGGTGTGTCGATTGCTTACTGGGAGAGCATTTCAGCTATGAGTTTGACTCAATTTTGGTCAGTGTATATAATCTTTTTTAGAGATGTGTCGATTTGGCGGCTGAAACCCATACTGGGTAAGGGCTGCCAGACTAACT # Right flank : TTTTTGCACATTTGACCCCGTTGCGGCAGGGTCAGCAAAAGCTGGAAACCGTGATTATCTCGTTGACCCCGCCGATGTCTCTCTCTGACAGGGTTTCAGGGTTTTTCTACCTCTAACTGACGCAGATAAATTCTGTGTGCATAGACCCCGTCGCAAACGGCATCTGGACATTAGGCACAGTCAGGGCTTAAAGTAGGAGGGGTCGCTTCTATTCTTAGAAGTGGAATTAATGGAAACCCGCCTATGGCCACCGCGGCGTAGAGTAGCGCTGTTTGCGCCGCTTCTATTCTTAGAAGTGGAATTAATGGAAACATTGTTAGTGCCTCTAGCGATTCGAGTACTAAAGAAGTCGCTTCTATTCTTAGAAGTGGAATTAATGGAAACTTGCCGGGGCGAAAAACGTTCCAGCTTTTCCTCTTTACTGCAATGTCGCTTCTATTCTTAGAAGTGGAATTAATGGAAACTAGGCAATCAGTCCCACCCCCGCCATCTCAAGCAGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAAATCGGAATTATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 11946-11593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRJ010000069.1 Cylindrospermum sp. FACHB-282 contig69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 11945 36 97.2 43 A................................... CTTTGTACCTGGATGACATACGGGTGACGAAGTGCCGTCCTAA 11866 36 100.0 47 .................................... GCCTCAGCCATCGAACTTACGCCACCTTTCACTATGAAGTCTAGGAT 11783 36 100.0 45 .................................... ACGAGATAGTGGGCTGTATTGCACACTACTATTACGTGGGTACAA 11702 36 100.0 38 .................................... TCTTCCCGAAGGTATTTCTCGGCATACCTATAAATTGA 11628 36 91.7 0 ..............................CA...T | ========== ====== ====== ====== ==================================== =============================================== ================== 5 36 97.8 44 GTCACTTCTATTCTGAGAAGTGGAATTAATGGAAAC # Left flank : TGCGGAAATAGGGGCAGAAAAGTCTTGATTTTTCGTTTGGAGTACAATAGGCGCTAAAAAGTTTTACTATCTGGATGAGCCAAAACCCATACTAACTTATTTGTCAATGTAATAACTGCCGAATAAATTGGACAAATTGCGTATTTATCATGTAACTTTTTCTGGGCTTTATTGTGGATTAATTGATTCAACTGATGATAAATCTTCTGGAATGGTTCTTGACCTTTTTTGAATTCAAAATGCAAAATTCAAAATTCTGTTAGGAAGAAGAATTAAGATTTTGAATTGATTAATTTTGGGTTCAGAGCTACCACTGATTGTCTTTAATTTTTAATTTTTAATTTTGAATTCCCCGAAGGGGTTGACCCTGCCGATGTCTCTCTCTGACAGGGTTTCAGGGTTTTTCTACCTCTAACTGACTCAGATAAATTCTGTTTACATAGACCCCGTCGCAAACGGCAGCTGGACATTAGGCATAGTCAGGGTTTAAGGTAGGAGGG # Right flank : TAAAAGGTCGGATATTAGTATCCCGACCTTTTTTAATAACCATTAAATATAGTTTAAATATTTACTTGCTACTCGCTATAAACTTTAACAATATCCTCGCCCATTCCCCTAACTTTAACTACTAACTCTTGTGGCTGTAACACCTTCAAACCCCCTCCAAACCCAACAATCCAGCGGATAAACTCTACATCACCCAAACACCATTTAGGCAATACTACCCGAAAGCGATTAGGGAAGTTTTTATCTCCGGTTTTCTTGAGACAAAAAATCGACTTGGGGGAGTTTAACTTCCCTCCTATTACAGGTGGAGACATCTTCATTTGCTGTGCAGGAAATCTCTTAGTTCCCTCAGCAATAAATCTAAACATAGCATCATTAAACCATAGCTCTACTGTGACACAGACTTGCGATCGCTTTTCTTTGTCCTGACTGAGAAACAGAACCTGGTCACTAGCACTGTACCCTAAAAAAATTCCCGCACCAGCAGCAGAGAGTTTATG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCTATTCTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //