Array 1 162576-160655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNY01000004.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162575 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162514 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162453 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162392 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162331 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162270 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162209 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162148 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 162087 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162026 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 161965 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 161904 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 161843 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 161782 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 161721 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 161660 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 161599 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 161538 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 161477 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 161416 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 161355 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161294 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161233 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161172 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161111 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161050 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 160989 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160928 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160867 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160806 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160745 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160684 29 93.1 0 A...........T................ | A [160657] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181187-179083 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNY01000004.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181186 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 181125 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181064 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181003 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180942 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180881 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180820 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180759 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180698 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180637 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180576 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180515 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180454 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180393 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180332 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180271 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180210 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180149 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180088 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180027 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 179966 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 179905 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179843 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179782 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179721 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179660 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179599 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179537 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179476 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179415 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179354 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179293 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179232 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179171 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179110 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //