Array 1 8121-8516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESIL010000004.1 Rhodovulum visakhapatnamense strain AB19 NODE_4_length_82690_cov_4.98018_ID_6924, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8121 30 100.0 31 .............................. CGCCTCGCTTTCCGGCGGCACTGAACGGTTG 8182 30 96.7 31 .............................G ACCGGCAAGGTAGCCAGCAGCCGCGATGTCG 8243 30 100.0 31 .............................. CGGGAGACGGGACCGATGGAGACATCTGGAA 8304 30 100.0 31 .............................. GGCAGCGCAGGATCGACGCGTGGGCCGGGCG 8365 30 100.0 31 .............................. ATGGTCGCGGCCAGCAGGCTGTTCTGATCCT 8426 30 96.7 31 .............................A GCGACTGCGCGCAGGCCGACGAGGCGACGGT 8487 30 96.7 0 C............................. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 98.6 31 GGTTCCCCCGCACCCGCGGGGATAGACCCC # Left flank : CCGCCAGACAAGTGTCCGAGCGTCCTTCCGAAAACATCGAACGCGTGACCCGTCGCATGACCGGTACTGCGCTCAGACGGGATGGTATCATCCCGGACATGATCGAAAGGATTAAGGCGTTGATCGAAGGGCGCGGGTCCTGATGCCGCTGACCATGATCGTCACCCGTGACGTCGAGATGCGCTACCGCGGGTTCCTGACGTCGGTAATGCTGGAAATCGCTCCCGGTGTTTATGTCTCGCCGGACATGTCGGCGGGTGTCCGGCAGAGGGTCTGGTCCGTAATGAAGGACTGGTGGTCGCAGCTGCGGCGCGGTTCTCTCGTTCTGGTATGGCGGGATCCGGCCTCGGTCGGCAATTTGCGCATAGAGACCCTCGGCGAACCGCCCAAGACAATCGTGGATGCCGACGGCTTATTGCTCGTAAAACGAAAGTGAATGACGGTCCACTCATCCGTATGCTCTTTGACATTGCTGGTATTTCAACATATTGAGCCCAAGA # Right flank : CAGTGGGTGCGCCGCTCGATCTTGAAATGGCCGAGGCGGGCGGGATCGGCGCCGATAAGCTCGAAAATGCGTTGCTCGGGGTCAGCCAGCGCGTTCAAGGTGCAACGCTCGCCAAGCGCCCTTACGACGCGCCACTGACCCGGGCGCGTATCCTGGAATTCATCGAAGATGATTCAGGGCCAGGTGATGGCAGTGAGCGCTCGGAGTTTGGCGGACCCCTCGGCGGGGTATTCTTCCGAGCCGAGATGGGTTCTCCGGGGCGTCACCGAGCCCGCGCAAGGGACCCAGAGGCCGCCGTAGTCCGAGAAAACCACCGGCCTGGTCGACACCGGCGTCAGATTTCCATCGGCATCCTGCGCCAATTCGCTGACATGCATCGCGCCGGGCCGCGATTCGAGATGGGTGACCGAAAAGATCTTGTCGCCGATATGCAGCAGCGAGATGGAATCGGCGTCGACCGAGACATGGTCCGAACCGTCTTCGGATTTCACCACTTTTCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACCCGCGGGGATAGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 9922-11805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESIL010000080.1 Rhodovulum visakhapatnamense strain AB19 NODE_80_length_18859_cov_5.31876_ID_7076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9922 36 91.7 30 TG.............T.................... CGAGGTGGACGGCGATCACCGCCGCACCCG 9988 36 100.0 30 .................................... CGCGGCCTCGTAGCTGATGGTGGTGACCTC 10054 36 100.0 29 .................................... CCTATAACGAGCATCAGGTTTACCGGCTC 10119 36 100.0 30 .................................... GAGGAGCAATCCGAAATCCCGGCACCTCGC 10185 36 100.0 30 .................................... TGTTTCAGTGCAGCCATGATTTTCTCCTCA 10251 36 100.0 30 .................................... TGTAAGGTCTCTGACCTGTTCTGCAAGCTT 10317 36 100.0 30 .................................... CTGATCCGTCTCCTGCCGCAGGGCTATCCC 10383 36 100.0 30 .................................... GGTCCGCGAGGTCCTTCTTCTCGCTTTCCA 10449 36 100.0 30 .................................... CCAGTCATGCGCCTTGTTATCCTTGCCCTT 10515 36 100.0 30 .................................... GCCATGCAGGACGATTTCCCCGCCCCTCCC 10581 36 100.0 31 .................................... GCGGATCGCGACCACCTGCACCGCCAGCGCG 10648 36 100.0 30 .................................... TGAATGCAACGATGGTCATCATCCCCACGG 10714 36 100.0 30 .................................... GCGCTTGCACCAGACGCACAGGCGCGTCTC 10780 36 100.0 30 .................................... GGATGTGGGAACGGGTGCATAGCCGCGTGC 10846 36 100.0 30 .................................... CGCATCGACCACGGCCCAATGGGTGCCGGT 10912 36 100.0 30 .................................... GCGTCGAATGACCATACGCTCGCAAGCCCT 10978 36 100.0 30 .................................... TCAGCCGCGGGTCTTCGGACAGGTTGTGCT 11044 36 100.0 30 .................................... GCCCGGCGGAGAGGGTCGGGCCATGGCATG 11110 36 100.0 30 .................................... CGGCATGAGCGGACGAGCGCCCGTGCCGTA 11176 36 100.0 30 .................................... CGGGCGGGATGAAGTGCGCGTTCAGTCCAC 11242 36 100.0 30 .................................... CCCACCTGCGAATGGCCCGCCCGCATGGCG 11308 36 100.0 30 .................................... GACCCGGACCTCGGTCGGTCATTACACAAT 11374 36 100.0 30 .................................... TTCCAGATCCGGCTAACCGAGTGCTGTTTC 11440 36 100.0 30 .................................... TGGAGCATCAGATCATTCGCGACACAAGCA 11506 36 100.0 30 .................................... GGCATGTATGTCGCCCGTGACGCTTGCGAA 11572 36 100.0 30 .................................... AGACACGTAAGCACGGCGCTGTTCGTCGAT 11638 36 100.0 30 .................................... GGAGGAGATGCGGAACCCGTTCTCCCCGAT 11704 36 100.0 30 .................................... CTGGACGCTGCTGCCCTCGCGCGCGCAGGC 11770 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.7 30 GTTGCGGCTGGACCTCGAATTCTGAACGGCTAAACT # Left flank : GCTGGGCCGATTCCGATGGCGATTGCCTCGATACCCGCGCCGAGCTGCTGGCGGATCTCTCCACCGTGCCGGTCACGCTGGCGCCCTCGGGCTGTTCGGTGCGCCACGGTCGCTGGATCGCGCCCTATACCGGGCAGGTTGTGGCCGAGGCCGGAGATCTCGACATCGATCACATCGTGCCGCTGCGCTATGCGTGGGATCACGGTGCGACCAGCTGGTCGGCCGAGAAACGCGCTCGCTTCGCCCGCGATCCCGTCAACCTGCTGCCCGTCAGCGCCTCGGCGAACCGCTCGAAAGGCGCGCGCGGGCCGCTCGACTGGCTGCCGCCCGATCAGGGCTTCCGCTGCCAGTACGTGCTGCGGTTCCGGCGGATCTCCAAGGCCTACGGGCTGGCGTTCACGGCTGCTGAAGAGCGGGATCTGGTGGCGCTGACCGGGCGGGTGTGCGGCGTATAAGCGCGAGTGCCTTTGTGCCAAAGGCGCTAATCAGCCATTCACAAC # Right flank : TGGTTCCCTCCCCAAGACACCGAAATTACGGCGTTTTTGGGAGTGGGGGAGTGTGAAAATCTGGGGAACCATCATCAAAACAGCACCAGTTGTTCCGGATTTTTCCGGGCAGATCTGCGACCTTGATCCGAGAAGTGTACGATATCACGGTATTGCCGGTCCGTGAAGCTGAGTATCTGAATGTCACCCTTGTTGGGCAGATGCCGCTCGATTCGGTTCACCCGCGTCTCGAACGCGTCCTTGCCGTTCACGAACCGCGCATAGACCGAGAACTGGCTGCGTTCGAATCCTTCGTCCAGCAGGAAATTCCGAAAATCCGTTGCCGCCCTGCGCTGCGGCTTGGTGTCCGTGGGCAGGTCAAACATCACGAGTATCCACATTATCCGATATCCAGACAGAAAGGTGGGCGCGGTGGTCATGCCCCCAGCCCCGCGAGGGTAAGCGCATCGGGTGGCATAGGCAGGGCGAGGTTCAGTGTTCCGGCTTCGAAACTCTGGCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCTCGAATTCTGAACGGCTAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //