Array 1 2081-229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCZD010000029.1 Campylobacter sp. 2018MI10 NODE_29_length_10965_cov_69.642739, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2080 37 100.0 37 ..................................... AAAAAGGCACAATACGACGCAAATGATATTGTTTTTC 2006 37 100.0 35 ..................................... TACTCATTCAAAAAATCTAACTCATCTCTAATTAA 1934 37 100.0 37 ..................................... CCAATCCCATCACAAAAAACTAAGGAGAGATTATGAA 1860 37 97.3 36 ..........................T.......... TACGGCTGTCAAAATCCATCTCATTAAAAAGGTCTA 1787 37 97.3 34 ..........................T.......... CTAATTTTAAATAATAAAATAGATTTTGATTTAA 1716 37 100.0 35 ..................................... AGATTTCAATCAAAAGTAATCAAATGGACTTTAGA 1644 37 100.0 36 ..................................... ATTACTTTTACTTTTGTTTTGGGATTATTTAAAAGT 1571 37 100.0 37 ..................................... AATATTATTAGTATGAAAAGCCTTTAATTCATCATAA 1497 37 100.0 36 ..................................... ACAAGATAAACGCACACTTGCGTTATACTTTAAGCC 1424 37 100.0 37 ..................................... ATACTTAGAGAATAATCAGTAAAAGTAGTGTATTTAA 1350 37 100.0 37 ..................................... AAATAAGTTTTAATGTTAAATTCTTTTAAATGCTCTT 1276 37 100.0 36 ..................................... GCAAAATTTTCAGCACTATTTAAATTGCTATCTTTT 1203 37 100.0 36 ..................................... TACTTAGTCATAGCAATATAAAAAATTCCTATTGTA 1130 37 94.6 33 .........................TT.......... AATAGAAGCAGTAGCACCAACAACAGCAACAGC 1060 37 100.0 36 ..................................... CCAAAAATCTTTTGAAATTCATTAAAATCCATTGTT 987 37 97.3 35 ..................C.................. TTTAATATCCATTTTGACCCAACTCTTGAGCTTAA 915 37 100.0 36 ..................................... TAACAGGTAATCAAATCACATTTTTTAGCCTTGAAA 842 37 97.3 34 ..................C.................. TTAGGTAGTTCTTCAGGCGCTGGTGAAAAAATAA 771 37 97.3 36 ..................C.................. TAACAGGTAATCAAATCACATTTTTTAGCCTTGAAA 698 37 100.0 36 ..................................... ACTTGGTGCTAGGGTTATGAGACCAGAATATGGCTC 625 37 97.3 34 ..................C.................. TCAAGCAAATCAATTAAGCTTATAAACTCATTAA 554 37 97.3 34 ..........................T.......... ACATATCAAAACAATGAATACTCTGTAAATATTG 483 36 91.9 35 ..........-.........G.....T.......... ACATTTAAACTCAAAATTAGTGATTGTTTTGCTTT 412 37 97.3 37 ..........................T.......... AGCGGAGTTAAAAGTATGTCTTTTATGCTATCTTCAA 338 37 94.6 36 .........................TT.......... CTAAAATATATCCCATTACCAAATAAATATATTGTA 265 37 83.8 0 ........................T.AT.C.A....G | ========== ====== ====== ====== ===================================== ===================================== ================== 26 37 97.8 36 ATTGCAAACCTAATTCTATCACAACACGGTTTGAAAC # Left flank : AACGGGGCGAAAATGCAACTACTAGCATACGCAAAAATAGCTAGTAAAACTTATGCTAAGCCTTGCAAAAGAGTGATTTTATGCTCATCAAATCATCTAAAACATAAGGTTTTTAATATTTTTCCGAATGATTTTGCTAGGCTTAAAAGAGTTGTAAAAGATATGAAAAATCTTTTAGATAATGGAATTTTTCCAAATAGTAGCGCTAGTCTTAATGCTTGTAATCAATGTGAATTTTTTAACTATTGTGATGATAGAGAATAAGTTGCGGATCCTAGGTGCTATGCAGAGCTAGGATTTTTGCTAACTTTAACCGCAATAATGATTTCAAACGCTCGTTGTGATAGAATTAGATTTGCTTTTTAATTTTAGTGATACAAACTAAACATAGGTTTAATTTTTCCACTAAAGTACTAAAATTTGAAAGAATTTTAAAAGTGGAAAAATCACTACTTTTTAAAAACTCTCAAATACTTGATATATAGCAAGTTTTCCTTGCT # Right flank : GTAACGATATAACATAATAATACAAAACAAATACGATTAAGCAAAAAATATAAAGTAGAAAAACTAGTAGTGAGTTTAAATTATTTAAATATTTTAAAATATTATTAGGAACTAGCATACTAATTCCTAATAATAAGTTTATTTTTAAGCTAATGAATCAAGTTCTAAATTCATTTAGCTTTTTGTTTAGTTGTTCTGTCATCTCACTTAGATGATTTGCTGCTCCTGC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAAACCTAATTCTATCACAACACGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 8939-8387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCZD010000029.1 Campylobacter sp. 2018MI10 NODE_29_length_10965_cov_69.642739, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8938 37 100.0 36 ..................................... AATGCTGATATTACAGAAAAATTAAATTATGTATTT 8865 37 100.0 36 ..................................... TTTTTGCGTATACTATTATAAAAATACCGACTATTT 8792 37 100.0 38 ..................................... TTAGTTAGGTCTAGTGGTTCGGGTGTAATTCAACAGAC 8717 37 100.0 36 ..................................... TTTAATGACTTGTATAAATGCCAAGATAGTTTTAAC 8644 37 100.0 36 ..................................... GAATTTGAATTAACTAATTTTTGATTAACGCTTTTT 8571 37 100.0 38 ..................................... ATAATACTTATTCTTTGTTTTTCTTTTTTTTTATTGCA 8496 37 100.0 36 ..................................... GATAAAGCCCATGTTTTAAAAGGTCTTAATTTTGAA 8423 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 37 GTTTCAAACCGTGTTGTGATAGAATTAGGTTTGCAAT # Left flank : ATTACACAAGAGGAAAAAAACGAAGATAGAGAGAAAAAGAAATTTTGAGACGTTCGGGGAACCAACGAATTAACGGCATTGGCTAATGCTTAAGGCTTTATGTAAAGTAGTCCGTTTATCGATACATTTTAACCCCTTTACCCGAGTTAGTAGCCATCTAACTCATCGCAGGGGCATTATAAATAAACATTATTAAGGAGAACTTAATGGAGATGAAATTTGGCTTAGGGCTAAAGTTAGCCTTAGGTGGATTTGATAAGCTAAAAACACAGCAAGAAAGATTAGAAAAACTTGGCAAAATAGCGAGACTTAGCACTGATAAGATGGACAAGCTAACAAAAAGCATAAATAAGCTTAATAATTTAGATATAAAAGCAGGTCTTGCAAAAAAGCATTAATAAAAATTTTGGTAATAATAGGTTTTTATTTTTCTATTTAAATTTTATTAGAATTGGGCTTATAATAAAAAATTACGATAAGTTTTTTATTTTTGTTTTTAA # Right flank : AGCAAGGAAAACTTGCTATATATCAAGTATTTGAGAGTTTTTAAAAAATAGTGATTTTTCCACTTTTAAAATTCTTTCAAATTTTAGCACTTTAGTGGAAAAATTAAACCTATGTTTAGTTTGTATCACTAGAATTAAAAAGCAAATCTAATTCTATCACAATATATTAGAGTTTGAAATCATTTTAAAGTTAGTAAAATATCGGGCAACTGGTTAGCCACCCCGATAACCCTTCAGTAAAATTAATTCAACTTATGATATTTTATGTATAGGTAAATGTTAGTTTTAAAACTTTTGATTTTAAAATCACTAATAAGAGTAGAAAAATATCGGATAATTATTTTATAATTCCGATATTTTATTATTTATTCCATAACATTTATAAATTATAATATTTTATATATACTCACACAAATGAATTTAAAGGAACAAGAATGAAAACTTATATTGGCATAGATATGGGAGCAAAAAATAATGGAGTATTTATAACACATACAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCGTGTTGTGATAGAATTAGGTTTGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //