Array 1 63858-63707 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYCD01000143.1 Escherichia coli strain ECOR45 ECOR45_contig_48_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63857 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 63796 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63735 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGCCAAAGAAGAACAACGAGCCAACTGGTTTCA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-1360 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYCD01000035.1 Escherichia coli strain ECOR45 ECOR45_contig_131_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 113 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 174 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 235 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 296 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 357 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 418 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 479 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 540 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 601 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 662 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 723 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 784 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 845 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 906 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 967 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 1028 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1089 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 1150 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 1211 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 1272 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1333 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGAATTTTGGCAGCGTGTAAAATCCACTTTTCAGG # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 639-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYCD01000008.1 Escherichia coli strain ECOR45 ECOR45_contig_107_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 638 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 577 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 516 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 455 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 394 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 333 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 272 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 211 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 150 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 89 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGTATTCCCCCAGTCACCCCCGCCACCAAAATC # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //