Array 1 172390-173538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWH010000001.1 Listeria booriae strain FSL L7-0510 NODE_1_length_682480_cov_19.045243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 172390 30 100.0 36 .............................. CTCGCCTATTATGACGAAGGAGCCTCGCGCCTAGCT 172456 30 100.0 36 .............................. CTAAAACCTCGTACTCATCTGGCTCTAACGGTTCTC 172522 30 100.0 35 .............................. TTATCTAATCTTTTTGCCACTCCAAATGCGTGTCC 172587 30 100.0 36 .............................. CTGGCAGGGGCGATGTGGGATGCTCGTGCGAAGGCG 172653 30 100.0 37 .............................. TTTGATGTCTACAGTTAATCCCGCTTTGGCCTGCAAA 172720 30 100.0 37 .............................. ATTTATAGGAATTCCTTTTGCTGTTTTAATTAAATTG 172787 30 100.0 36 .............................. ATGTTTGCTAACTTGCCAAACAACATCGCGTTCTTA 172853 30 100.0 35 .............................. TCTTCTTTAAACCTCCGACCATTTTGTCTTTTTTC 172918 30 100.0 37 .............................. ACTTTCGCTGGAGCAACTCCCCTAAAAACGAACTCAC 172985 30 100.0 34 .............................. TTTGTATATCGATTGATAATGGCGTCCTCATCCT 173049 30 100.0 36 .............................. AGCTTTATCACCCACTTCTTTAAATCTAGCGGAAGT 173115 30 100.0 36 .............................. AGGTTCCATCTGCAGATTATACACAAGGCATCTTAG 173181 30 100.0 36 .............................. TTAAACCAATAAATCCCATTTGCAAAATATTTTCTT 173247 30 100.0 35 .............................. GCCATCCGTCGGGAAAACGGCTTTTGCCCTAAACA 173312 30 100.0 36 .............................. TAGAAAATCAGTCCCTCTCCCTTATTACTATTCGTT 173378 30 100.0 35 .............................. GAATTTAATGGAATCGAGTTGACACCGCCAAAATG 173443 30 100.0 37 .............................. ATCCATTTCATGTAATCCTTTGCTTTATTTGCCGGTT 173510 29 73.3 0 ..C......A.......-A.G...C..G.C | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 98.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTTCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGGATGGAAATCCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGAGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGACTGGATTTGAGACCGTTTTTGGAGGTTGGATTGTAAGGTTTGGGAGCGGAAATTTAGGATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTAATCGGGTACCT # Right flank : CTAGATTGCTCACAGATGCAGTGTTTCTATCCATTTTTTCTAGAATCAATTATAATTAAACAATCCCCAACCAACCCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGGTTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGACGGCGGGGTTTGAGGTATATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAAGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCCATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 43214-42597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWH010000011.1 Listeria booriae strain FSL L7-0510 NODE_11_length_114461_cov_17.925322, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 43213 30 100.0 36 .............................. CTGGTTTACCCAAACAGGTGTAGCGCAAGTTGCTGC 43147 30 100.0 36 .............................. CAAATTCAGTGGGATTACCTTGCTGGGATCTTTTTA 43081 30 100.0 36 .............................. TTATTACGCGATGATTGACAAGAAATGATTGCAAAT 43015 30 100.0 36 .............................. TACGACTTGCCAGGTAGCAAATCGAAAAAAGGAGGG 42949 30 100.0 35 .............................. AAACTTTCGCATTAAAACTGTGACTGACATATCAA 42884 30 100.0 36 .............................. TCGCGAAATCCACCGCGGCGAAAATATCGCACTGAC 42818 30 100.0 35 .............................. TTGTTTAGTAGTAATGGATATTAACTCTCTTGTTA 42753 30 100.0 36 .............................. CCTCTATTACCTGGTAACCAAACAGAAGGGTCTTGG 42687 30 83.3 32 .G.........G.T..............TG TCGCTGTATCCCCTGGTTTTTTAACGCGTCCA 42625 29 73.3 0 .............T..G.G...-.CC..CA | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 95.7 35 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGATATCATCAGCAATACGAAAAACTGGGAACCATTCCAAATAGAAGCATTACAACATGAAATGAGCAACTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAATAATTCCTGCGAATAGCGCATTGATTGTGCAAGAGGGGAAGAAAAAGATGATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGTGTTGGTACTAAAGGGGTTAAGCCTGTTTTCGAGGTTTGGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACTT # Right flank : AATAAGGCATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTAAACAATGGATATCCACCCTCTTATCTATGCCCCATATGTTGAACATTTTTAGCATGCATTTAACAACAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCTAGTACTCTACCATTGGCATCATATGCAGTTAATGTGATAGTGTCCGTATTTTTTAAAATCACTCGTTTCGCATAATACTTAA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 47543-46461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWH010000011.1 Listeria booriae strain FSL L7-0510 NODE_11_length_114461_cov_17.925322, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 47542 30 100.0 34 .............................. GGAATGCAATGAGTGAGACGAATGGTACGATGGA 47478 30 100.0 34 .............................. CCGTTGCCGCCATAACAGCGAATGAAGCAATAAA 47414 30 100.0 36 .............................. AGTCTAAAATTGGTATCGTATAAACAAAATCATCCG 47348 30 100.0 35 .............................. GTGTACACGTAAGGTGTACCGTCTTTATTTATTAC 47283 30 100.0 36 .............................. CGGCTCTAAAAACTGAACGGCTTCGGCTAAAACTTC 47217 30 100.0 36 .............................. AAGGCTAAGACAAACGAAGTTCCAGCCGTATTAATC 47151 30 100.0 36 .............................. CATGCACTCATGAAATCCCTTGGCTATGTCGTCTTT 47085 30 100.0 36 .............................. TAGTGAAAACATCATGGCAAGTGTAGGAGAAAATAA 47019 30 100.0 36 .............................. TCCAACGACGGATCATGGCAAAGCGTGCTAGAAACA 46953 30 100.0 37 .............................. CGGGCTCTCGGTCAACTTGACTTGCCGGAAAAGTTGC 46886 30 100.0 36 .............................. TCGGCTAGCACAACGATGGTTCTTTTTAGGTTGTTG 46820 30 100.0 37 .............................. ATTTTTATCGAATCAGGCTTTGGCATTAACGGCGGGT 46753 30 100.0 35 .............................. AGGGTGGTCATTTAGTAAACGGACAAGCCATTGTC 46688 30 100.0 37 .............................. TGGTATAGTGCAACCCGTGCAGTCGTATCCCCACGCA 46621 30 100.0 35 .............................. GATTATATCAAGGATCAATTAATAGATGCCTTAGA 46556 30 100.0 36 .............................. AAAAGATGCTCAAAACGCGCAAAAAGAATATGCCGA 46490 30 86.7 0 .......................CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.2 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGTGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAAGGGGTAGGATGATTTTCGAGGAGGCGAAAAAAATAAGTAGATCCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGATACCAAATGACTATGGAAAAATTAATACTACAAGTCACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAGCTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGCCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 268097-266490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWH010000005.1 Listeria booriae strain FSL L7-0510 NODE_5_length_330361_cov_21.049821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 268096 30 100.0 36 .............................. ACTTCTGTGTGCGTTCTATTTTAGAACATGGTTGAT 268030 30 100.0 37 .............................. TAGTGCGTACTATCATCCATGATGTCGGGAATGACCG 267963 30 100.0 35 .............................. CTTTGTGTACTGTCACTTTTCCTTTGTTGAGTTCA 267898 30 100.0 35 .............................. TTAGCAAGTCCTCGTACGCTTCTAAAAGCTTCTAA 267833 30 100.0 36 .............................. CTATTTGAGGCTGGCAATGTTTACTTACCACACCCG 267767 30 100.0 36 .............................. AAGCCAGCGCCAGCAGCTCCTCAAAAGACTGGTAAA 267701 30 100.0 35 .............................. GTAGAAGATAAAACAGAACCAGCACAACCAAATAA 267636 30 100.0 36 .............................. GCAGGCGAATGCCAGATTGTTCCGACAAGGGCAAAA 267570 30 100.0 36 .............................. GACGTAGATAGACGCCACATCGATTTCGTCCAAATA 267504 30 100.0 36 .............................. ACACGTTGGAGTGTCTGTCTTAAAGACTTCCCTCCT 267438 30 100.0 36 .............................. TTTGTACTTTGAAGATTACTAGCTTGCTTTGACGCT 267372 30 100.0 36 .............................. CGCCGATGTGTGGAGTGAGACAGAAGTTGCCTACTA 267306 30 100.0 36 .............................. CAGTATCGCAAAATCGGCACGCTAGTCATGTATCGC 267240 30 100.0 35 .............................. GTAGGAATCGCAGACAAAGCAATTTTACCATCTTT 267175 30 100.0 35 .............................. AATTCTTTGATAGCATCCTGTTTGGTTGCATCTTC 267110 30 100.0 34 .............................. ATGAAAGTTGCACGCTCCCCCAATCTTGCTCGGG 267046 30 100.0 35 .............................. GCATGAAAACTTATCCGCTGGTTCGTTTATTGTTT 266981 30 100.0 36 .............................. AGAGAATGCTGGAGGTTACAAGGTTTTCCCGACTGG 266915 30 100.0 37 .............................. GCTAAATTAGCTGCAAATGCTCGCTGGGCAAAAAGTT 266848 30 100.0 35 .............................. TACTGAGTTCCTAGCGTACACTTTAACCAGCCATT 266783 30 100.0 36 .............................. ACCGTACTTGCAAAAGTGAATGTCAACGGTAGCCCG 266717 30 100.0 37 .............................. ACCGCCGTCAGGACAGGATTCACGAGTTGCACTTTAT 266650 30 100.0 35 .............................. TAACGATATTGGGTTGGATAACTCGCCATTTTTTC 266585 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 266519 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 98.9 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTAATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGTCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGTCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : CAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAAGCAATGTTCGTAGCCAATGTACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACATTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //