Array 1 291-776 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGSXT010000009.1 Lactobacillus crispatus strain 9.2 scaffold00009, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       291	    36	 100.0	    30	....................................	AGTAGTCTCCAATTCAAAAGGTGCTTACGT	
       357	    36	 100.0	    28	....................................	GCACTTGAATCTTGTCCCTGCTAGGAAC  	
       423	    36	 100.0	    29	....................................	TCGAATTTAGAAAAATCAACATTAACGCG 	
       489	    36	 100.0	    30	....................................	CCGTGAAAACGGCGTTTACATGCGTAAGAC	
       555	    36	  97.2	    17	..........G.........................	TATTAGCTTTTGCGGCG             	Deletion [608]
       608	    35	  80.6	    30	..ACC.A.C.G..-......................	TAAAGAAATAAATAATAGAGGTGTGAGGTA	CGT [615]
       676	    36	 100.0	    30	....................................	CCACTATCGCGCCTGGAATACCTGTTTTCT	
       742	    35	  83.3	     0	.....................-...G.AG.C...A.	|                             	
==========	======	======	======	====================================	==============================	==================
         8	    36	  95.1	    28	GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC	                              	       

# Left flank :   GACAGTTTCATGTTAACACCATATGCTATAATTGAAACAGTTCTTAAGATTCATCAAGAATATAATCTTGATAGTATTCCCGTGTTTTGTAATGTAGCTCATTACCTTGATGAAACACAGTTAAAAGAACTTAGTAAGATTGTTAGACAACTTAAATTGAAAATTATTTTAATTGAATTCACAGATAAGAAATATGGGGTAGCAGTCAAGGATGCTCAAGTTGCATATATTGATCGAGATCTTGTTGATTGGTATTAGACAATTGATTAAAAAGATATTATGAAATATCGG
# Right flank :  CAGTAATATGCATAAATTTACAAATATTTTTCTGTAAATAAAAATCGCTCTAGAGAAACTCTAGAACGATTTTTGGACATACTTGATCTTAGTATCTATTATTACTTAGCGTAATCATCAATACCCAAGTGCTCCAAAATAAGTGCGGCAGTTTCTTCAATGGAGCGGTGAGCAACATTAATTACATAGCAACCTAATTTCTTATAAAGTGCTTGTGCTGATTCAAGCTCCTTGTTGATTGAATCCATATTAGAATAAGTAGTATCAGGATTCAAACCATAAGCGATCATTCTTTGACGTCTGATTTCGTTCAATACAGATGGATCGTTAGTCAAGCCAATAATCTTCTTAGGATCAATTTCGTAGATTTCTTTTGGAATGTGAGTTTCAGGAACAAGTGGTAAATTAGCTACCTTTAAGTTCTTATTGGCTAAGAACAAAGAAAGTGGAGTCTTAGAAGTTCTTGATACCCCAAGTAAAACAACGTCAGCTTCCAAGAA

# Questionable array : NO	 Score: 5.83
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.00%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.60,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [3-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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