Array 1 166401-164924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA6 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166400 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166339 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166277 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166216 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166155 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 166094 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 166033 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165972 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165911 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165850 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165789 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165728 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165667 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165605 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165502 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165441 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165380 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165319 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 165258 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165197 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165136 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165075 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165014 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164953 29 96.6 0 A............................ | A [164926] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184148-182533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA6 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184147 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 184086 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184025 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183964 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183903 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183842 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183781 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183720 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183659 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183598 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183537 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183476 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183415 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183354 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183293 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183232 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183171 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 183110 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183048 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182987 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182926 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182865 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182804 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182743 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182682 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182621 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182560 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //