Array 1 16506-14712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPL010000010.1 Clostridium haemolyticum strain CCUG 7970 CCUG_7970_contig_0000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16505 28 93.3 36 --............................ GGTCTACTACATTACTATTTCCATTTGCAACTTTTT 16441 30 100.0 34 .............................. TATGATTCTTGTACTATTTCTTTTTTATCTACCT 16377 30 100.0 35 .............................. TGATAACGAAGCCAATACAATAAGCGAACATTATA 16312 30 100.0 35 .............................. AAAACTTATTGTATCTAATAATCAAAAAGAAATAC 16247 30 100.0 35 .............................. GTTTATCGTGATAATTTATTTTATTTGTGTAAAAT 16182 30 100.0 36 .............................. CCAACTCGGCTAAATCTTCTTATAAATATTAAAGAT 16116 30 100.0 36 .............................. TCAGTACATCAAGTATTAAATCAAGAGGGTATCCAA 16050 30 100.0 36 .............................. TTTGGTTTAGTTTTATGTCATTTTTGACGTGTTTTA 15984 30 100.0 37 .............................. GTTAATTCTTATTTAGAATTAGATAAAAGTGCTAGTA 15917 30 100.0 36 .............................. TTAATTGTATATTTGTTCATTCAAACACCTCAAAAG 15851 30 100.0 35 .............................. CTCATGGAATTAAGTGTTAATAGTGATAAATTTAC 15786 30 100.0 34 .............................. ATATAGATGTAACATCATTTTATAATAGAATAGG 15722 30 100.0 35 .............................. AGACATAGTCGAATGTGTTGAAAAGTGGTGCTTAG 15657 30 100.0 35 .............................. GCATTTTCTATTAATAGTTTTATTAAAGTATCTTC 15592 30 100.0 34 .............................. TTGAAATAGCTTTTATTAACCATCAAAATCGTAT 15528 30 100.0 36 .............................. AGGGATAATGCGACCTTATGCATAATTTTAGTTTTT 15462 30 100.0 36 .............................. AAAGGTCAACGACATACAAGAGTATCTCAAAAGGAC 15396 30 100.0 36 .............................. AAGTTCCTGGAGATTTGAGGATAATTGGGATTTAAC 15330 30 100.0 36 .............................. AGGGTAATAAACCAAGGTCTTTTATTTGTCCATCTA 15264 30 100.0 36 .............................. TATCTTAAAACTACTTTATCTATACGATGTAAAACC 15198 30 100.0 35 .............................. GTTTTGCCTGAGCCTGTTTGACCACTAACAAGAAC 15133 30 100.0 35 .............................. TAAGATTATACAACAAAGGGCATGCAGTAAATTTT 15068 30 100.0 35 .............................. TTTGCATCTAATCCACTCTTACTAGAAATGCCAAG 15003 30 100.0 34 .............................. AATGAATGTACAGTTTTTTGCATACCATCTGCAA 14939 30 100.0 36 .............................. TACGACCTCGTTGCATGTCAACTGGATGCGTTAATA 14873 30 100.0 36 .............................. ACCTAAATTAAATAATAAGACGACACAACATGAAAT 14807 30 100.0 35 .............................. TCTTGTTCACACATTATTTTTAGTAACCCTTTATC 14742 30 93.3 0 ............................GA | C [14716] ========== ====== ====== ====== ============================== ===================================== ================== 28 30 99.5 35 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : | # Right flank : AAAATTAGTTAAATACTAATACAACAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGGAGTAATTAAATTTATATTGTGTTCTTCAAAAAACTTAACATACTCTTTAGGTGGAATCCTATCTGTAATAAAACAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCTGCTAAAAGTATTACATTGGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTTTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCCTCCTGTGGATAATATATCTACATTTGAATAAGGCAAAGCCTTTAGTAATATATTAAGATTATTAGTTATTATAGTTAAATTTTTTCTATCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1991-63 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPL010000154.1 Clostridium haemolyticum strain CCUG 7970 CCUG_7970_contig_0000154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1990 30 100.0 35 .............................. AAAAAAATGGACTGAACTTTGGAAAGACTGTTTAA 1925 30 100.0 36 .............................. CAAATGAATATGTCAAGGGCGACCAAAGGGAGTTTA 1859 30 100.0 35 .............................. GAATTAAAAACTCAAGAAGATACTATCAATAAAGA 1794 30 100.0 35 .............................. GCCGTTAGACAAAGACAATAACAAAATCCATTATG 1729 30 100.0 35 .............................. AAGAGTGGGTTTAGCTCCTTTGTCGCTATTTCCGT 1664 30 100.0 35 .............................. AATTGTAAATATAGATATGTTGATGAAGATAAAAT 1599 30 100.0 37 .............................. CATGGATATTATACATTATACATATGTGTATGTCAAC 1532 30 100.0 36 .............................. TCAATAATCTTTTTCTCAAATACTCCTCTAAATTGC 1466 30 100.0 36 .............................. AAAAGAGTTACAAGACTTGATGGATAATAAGTTTAA 1400 30 100.0 36 .............................. TAATCAACGATACGAGCAACAACGCTAATTGGTTGT 1334 30 100.0 36 .............................. GATAGTATTAAGGATTGGTTTGTTAAGGAAGCAGAA 1268 30 100.0 36 .............................. TTTATTAAATCATCTATATCATCACAATCTTCTTCT 1202 30 100.0 34 .............................. AAAGAAAAGTATACAGGCTATGGGTGTTATGGAG 1138 30 96.7 34 ....................T......... CCTTTATAATTAGCTTTGCTATTTTCTAAACTAA 1074 30 100.0 36 .............................. TTGTAAGAACTGTTTACAATATTTTCTGATATTCCC 1008 30 100.0 35 .............................. GTGTCAATGTAATCTCGACTACCTCCAAGATTTGC 943 30 100.0 37 .............................. GATTGCCATAACTCTAAATCAAACACGGTCATATTTC 876 30 100.0 35 .............................. ATTCAAATATATATAATTTCAAGTATATTTTAAAA 811 30 100.0 36 .............................. AGCAATAGACTATAACGCACTTTATGGAGATGGTAA 745 30 100.0 36 .............................. AGGTGTTCATACAATGTTTATAGAAGAATTTAGGCA 679 30 100.0 34 .............................. GTTCTATTTTCAAAGTAAGTATTGCTTACCTTGT 615 30 100.0 34 .............................. TCACCACCACCACCAGTACCACCACCAGCAGAAG 551 30 100.0 36 .............................. TTTATATAAATAAGTTGTCCCTCTATCTTAGGATTG 485 30 96.7 36 .................A............ TATATATCTACCTCCCTTGTAGTGTTTTAATTCCAC 419 30 100.0 36 .............................. GGCTTAAGCTAAGATTTTGGTCTATTTTACATGGGA 353 30 100.0 34 .............................. TATATTCTAGTCTTGCATTTATTGGGTTGTTAAT 289 30 100.0 36 .............................. TTGTTATCATAATCTCTTATTTTAAAATTATGTTTA 223 30 100.0 34 .............................. AAGCCTTACATATGCAACGAAATTAAGCGTTTAA 159 30 100.0 37 .............................. AATTGAATACCTCCTACATCTATTATTTCATCATATC 92 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 30 30 99.8 35 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGATAAGATATAATGAGTAAAAAAATTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAGAGAGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTTAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAGAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGTTAGGAGTAGGTATTGAAACTGCAGAGGATTTAATTTTATAAAATTATTATCCCAACCGATTAAAAAATTCAAACTAGTCCCAATCCTTGATTTAACTGTTTTTGAGTGGTATTTTGGTTTAAAAAATTAAATTATGAAAGTTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATCTTAAAGGTATAATATAAATAAGGAATAGCTATTTTACTATG # Right flank : TGACTCTACTTGTATTAAACTGTATGGAGCAATAGCAGTTGAACATTAACATAAGATGTATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //