Array 1 66033-66305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVVY01000036.1 Corynebacterium propinquum strain 1274_CJEI 156_66325_1353600, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66033 29 100.0 32 ............................. CCAATCGGCAACCTGATTCCGGGTGAGAATTT 66094 29 100.0 32 ............................. GCGAATCGCTGGCCATAGCATGATCGCGGTCA 66155 29 100.0 32 ............................. TTGACTGGGCGGAAACCAAATACACCACGGGT 66216 29 96.6 32 ............................T TCATCTACGCCTAGGTATTCATCGGCAGAGTG 66277 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CTCTTCTCCGCGCATGCGGAGGTAATTCC # Left flank : GTCGTCGCGTCAGAACGGAGATTCACGGAAATCAAGTTCTCAAAGAGATGTTGTCTACGCTCATGCATATTCTGGAGCCGCACTTACCCGCACGCGATGATGACCGGCTAGTAGCAGGGCGCGGTGACGAGGTTTTGGGACATACTCAATATGGGAAAGATAAATAAATGTTTTTAGTATTGACTTCTACTTATCTTCCTGACCATCTGCGCGGGTATTTGAGCAGATTCCTGATAGAGGTGGATCCCGGTGTTTATGTCGGCAATATCTCTCGCAGGGTGCGCGACAATATTTGGAAGCGCTGTGCCGAAGCAATCGATCGCGGCAGCTTAACCATGATCAACAGCGATTCCAGTAGAGAGCAAGGATTCGCTGTTAACACTCTTGGTCCGCAGCGCAAAAATATAATAGACTTAGATGGCATGTTGTTACCCGCGACCTTATCGGCTGTAGCGTCACAAAACGACGCCAACCGCTAAAGTTTCCGCAGGTAACGCAGT # Right flank : ACCGTATCCGCCGCTAGCAC # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCATGCGGAGGTAATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 82378-81800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVVY01000041.1 Corynebacterium propinquum strain 1274_CJEI 176_82395_1728562, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82377 29 100.0 32 ............................. TTGGATTCTGTGGCTGTGAAGCTGGATGAATT 82316 29 100.0 32 ............................. CGCCGCCCGCGCCCCGCGTGGCCTGGAAATCA 82255 29 100.0 32 ............................. AATATCGACCATGGCCTAGCCCTCTTCGAAGC 82194 29 100.0 32 ............................. GTGGCTTTACGGCCATCACCGCGGGCGCCACT 82133 29 100.0 32 ............................. TGGATATTTTGGTGCCCGCTGAGGGCGCGGGG 82072 29 100.0 32 ............................. TTCAGCCCCCTTGGCGTACAGGTCGGTTTTGC 82011 29 100.0 32 ............................. GCGCGATCGATGTCATGGCCTGCAGCCATGCG 81950 29 96.6 32 ............G................ TCGGTAAGTTTTGCTTCGATCGTTGCTTGTTT 81889 29 100.0 32 ............................. GGGTCTGTCTGCATGGTGCCAAGGTGGCGTTG 81828 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 CTCTTCTCCGCGCATGCGGAGGTAATTCC # Left flank : CATCAGGTGGGTTGTGG # Right flank : ACTCACCTGGGCTACTCGAAATGTTGGACACTTAGACTTCAATGATCCTCACTTTGTCGTGAACTACGTAAAACAAGACGCGCTATTGCCACGGCCCCCGCGACTGGAATTTCACGCGCAAGGCAAAAACGTAGAAGACCCTGATTATTGGTTTATGCCCAATGATTCAACTTACGCTGATTTACGCTGGACGGAACACGCTAAGTTACTGAAAGAACTTGGATTTATTGAACAGCCGCTGGCTAAACCGATCAAGGGCGAAATTTCATACAGTGGCCGCCGTGGCTGGAAAGTGACACAAGAGCTAGCTTGGGCCTTGCAAAACCTTAGCGTCAACTAGGCTTTTCACGCATCACCCTGCGAAGATTGATCAGATCGGTTAATGATGCGGTATAGCATCGCTCTAGATAGGCCAGTTCGTCGGTGCAGTTCCATTTTGGAAACCCCGGCATTAACGGCGGCATCAATCGATTGGTAATAATCATCGCGCGCGCTAGCTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCATGCGGAGGTAATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 20-963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVVY01000021.1 Corynebacterium propinquum strain 1274_CJEI 95_984_18080, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 ............................. ATGCCGTTTTGAGCTGTGAACCACACACGCGC 81 29 100.0 32 ............................. TGATCGTAGAGAGTTCCGGACGGGCCGATATT 142 29 100.0 32 ............................. GGACTAACCTCATGGCAATCAAATCAACCATT 203 29 100.0 32 ............................. CCCATTCTTGTATTCATCGGCAAGTGTGACGC 264 29 100.0 32 ............................. GGTGGCCTTATCGGTGGTATTCCGCGCGCCAT 325 29 100.0 32 ............................. CATTAATCACCCACACATCCTCGGTGGTTTCA 386 29 100.0 32 ............................. GAGTGGCTGGCGCGGGGCTACCGTGACCTGCG 447 29 100.0 32 ............................. GATCACTTTGCATTGAGTGCAGAGAATCTTCA 508 29 100.0 32 ............................. TGGTGCAGCGAGCTTTGCCTGTATGGCTGCGA 569 29 100.0 32 ............................. GGGGGTGGTGCTCGCCCAAGCCGATACTGAGG 630 29 100.0 32 ............................. TGCAAGCTGCTTGGAAAATCGCGATCTAGTGT 691 29 100.0 32 ............................. AATCTCGCCCTGCTCAGCCAAATCTTTGATCA 752 29 100.0 32 ............................. GGAGGGCTTCGAGGACTTCGCGGTACGGCCCA 813 29 100.0 32 ............................. TTCACATCGCAAATTGGTCCTATGCGTAATGT 874 29 100.0 32 ............................. GATGTAGGGCCAGCCGCCAGGGCGTCCGCTAG 935 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GGAATTACCTCCGCATGCGCGGAGAAGAG # Left flank : TTTCCGGTAGCGTGCCCCGG # Right flank : TTTCCGGTGGTGGTGCTAGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAATTACCTCCGCATGCGCGGAGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //