Array 1 1537290-1541350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010411.1 Bifidobacterium longum subsp. infantis strain BT1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1537290 33 100.0 34 ................................. AGGTTCGAGCTTGACCATTCGCCCAGGTTCACGT 1537357 33 100.0 33 ................................. CGCGCGTCATGGGACTCGATGACGAAGGGAGAA 1537423 33 100.0 35 ................................. CTCGACCAAGATCAGCCCGTCCCTATCGTTGAATT 1537491 33 100.0 34 ................................. ATCGCACGCATGATCAGCAGCCTGCCCCTCAAGG 1537558 33 100.0 34 ................................. CACTTGTCCTTGGTCTCTATGGGGTTGCCGCCGC 1537625 33 100.0 34 ................................. AACGCTTCCTCGACCTGCTGGTCCCACCGTTCGA 1537692 33 100.0 34 ................................. ATTATTTCTGAAGGGATTTTCCCGAAGAAGCGGC 1537759 33 100.0 35 ................................. CCGTGTGGGGTTGGTGCGGCTCATTTGACGAGGTT 1537827 33 100.0 33 ................................. CTCAGTAGGAATTCTGGCGTGATCGTCAAGACC 1537893 33 100.0 35 ................................. GGCCAATGTGGCCAAGTCCGACGCGGCTTCGGCCA 1537961 33 100.0 35 ................................. AGGACGTCCCAGCTCTTCGCGTCGGGATCGCTGTA 1538029 33 100.0 33 ................................. CCATATCGCAACTGCCTTATCTATGTCAGGCGC 1538095 33 100.0 35 ................................. CCAAAAATACTATATCATGATGTCCGTAAAAACAA 1538163 33 100.0 37 ................................. TACAACATCCTTAACCAGATATTCAAGGCGGCGGTGG 1538233 33 100.0 33 ................................. CATGTGGCGGAAACACCAACTCCGTCTCCCTCG 1538299 33 100.0 36 ................................. ATTGACCCCACCATGAGTGTGGAACAACGGGTATGC 1538368 33 100.0 34 ................................. ATGGACGCGTACTGCGCCTTCCACAGCATGCAAT 1538435 33 100.0 33 ................................. TTCCTGTAGTTCTTGCCTTTGCCTCTGTTGATC 1538501 33 100.0 35 ................................. ATCACTATGTCGCCTATGGAGACGCCCGTCACCTC 1538569 33 100.0 34 ................................. TCGCTCTCATCGGTGGTGGTGGGCTTGGCGGACT 1538636 33 100.0 34 ................................. TTCGATACGCTTCGCCTCCGAGATGATGTCCCGG 1538703 33 100.0 34 ................................. AACAACGTCGAAAGCATCGAACAGGTGGAGGCCG 1538770 33 100.0 35 ................................. TCGGCACGATGACGGCGGCCTCCTCACCGGCTTCG 1538838 33 100.0 34 ................................. CAAGCGGAGCCATCCCACACCAAGGTGTCGATCA 1538905 33 100.0 36 ................................. TCGCCAAACGGTTCGGCGGCACCCCCTGGGCATGGC 1538974 33 100.0 35 ................................. TTTTTATAAGGCGCAATGCGCAGGAATGAATAAAA 1539042 33 100.0 36 ................................. CATACCCACCGGCTCGCACAAAACCCATAGGCGAAC 1539111 33 100.0 35 ................................. CAATCCGAGCGCGCTGCAGGTCATGAAGCATGAGA 1539179 33 100.0 33 ................................. GCCGTCGCCGTTTTCATGGGCTTATGGCAGTGC 1539245 33 100.0 34 ................................. AGGTCATGCAGCATTCTGTTGGCGCTCTCGTATC 1539312 33 100.0 33 ................................. GATTCCGATTTGGATGATGTGGCGCGCACCATC 1539378 33 100.0 33 ................................. TTGATGATGAACCGGCCCCGATCACTCAAGAGA 1539444 33 100.0 35 ................................. ACCTGGCTGAAGGGCGCCGTCACCGGCGACCATCA 1539512 33 100.0 36 ................................. CTGATGGCCGGACTGACCGACTCCTACCAGTCGCTG 1539581 33 100.0 34 ................................. CAAAAACTCAACCAGCTCGTCCTGGAAAAATAAC 1539648 33 100.0 34 ................................. ACCTACACGGCGTCCGGCGGCGTGATCCGCTGCC 1539715 33 100.0 32 ................................. CACGTGAGACGCTATTGCCCGCAACCCGAACG 1539780 33 100.0 34 ................................. ATCGAAAACGCCCACGCCGCAGGCATGAGCGAAC 1539847 33 100.0 35 ................................. CTGGACGGACGGCGAGGTGCTCATAGACGAGGATC 1539915 33 100.0 33 ................................. ACGATCCTCGGCAAGCGCAGGACGCTGGCCATC 1539981 33 100.0 33 ................................. CCGCTGACCGGCGATACGGCGACGCTCGAGAGG 1540047 33 100.0 36 ................................. GACGTATTCGCGTAGAAGAACCGGGCCTCGGCCTCC 1540116 33 100.0 34 ................................. GTCGGCTGTCAGATACACGTGGCGTCGACGCTGT 1540183 33 100.0 35 ................................. CAGTACGTGAAATGAGACATTGCCATAAGATTCGC 1540251 33 100.0 33 ................................. GGAGTTGATGATGATGTTGTGGCCTATTTGGAG 1540317 33 100.0 34 ................................. ATTGTCCTCATAGGAGGGTGTACGAACTACGGTA 1540384 33 100.0 35 ................................. CAGAAGGTTTCGGCCTGCTCCCCTCATCACCGGAT 1540452 33 100.0 32 ................................. TCCATGGTGGAGGTATTGCGCGCCGAGGCCGC 1540517 33 100.0 33 ................................. GAATGCAACCATCGACAAGACCGGCAAACTCAC 1540583 33 100.0 34 ................................. CTTCGAATGGAGAACGTGTTGGCCGATGAAGCGT 1540650 33 97.0 36 ...........T..................... ATGTCCGCAAACTGCATGGTCTGCTGGTTGCCGAGA 1540719 33 100.0 36 ................................. AACCAATTATACGAGTCCGCGCGGAAAAAATTCGAC 1540788 33 100.0 33 ................................. CGTTCGTTCGTGGACGAATGGGGCGGGTTGAAA 1540854 33 100.0 34 ................................. AACGACATCGACTACCAAATCGGCATCATGCTCG 1540921 33 97.0 35 ..................C.............. ACGGTGCGCACGTCCGTGGGGTCGCCGTTCTGATA 1540989 33 97.0 35 ..................C.............. TGGAACTGTACGCCGACCCGACAAGCAAATACCAT 1541057 33 100.0 33 ................................. GGCATGACGTGCCAGCCACATTCGCGGCGGATG 1541123 32 87.9 33 .......T..A.-T................... CTGAAAGGCGACAGCCTGTACATAGCCGGCGAA 1541188 32 87.9 33 .......T..A.-T................... CTGAAAGGCGACAGCCTGTACATAGCCGGCGAA 1541253 32 90.9 34 ..........A.-T................... TGCACCGCACTGGGGTTATCGAATGGTAACGCAT 1541319 31 93.9 0 ......--......................... | T [1541333] ========== ====== ====== ====== ================================= ===================================== ================== 61 33 99.2 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : GCGGAACGTGGCCAAGATTTGCATGAGATACGGTCAACGCGTGCAGAACAGCGTCTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATTTGGCGGCGGTTATGGATGAGTCGCAAGATAGTCTTCGATACTACAACCTCGGGGCGAAGTATTCCTCGAAGATCGAATATCGAGGAAGGCAGCGACACATGCCTGTTGATGGCGTGATGATGCTTTGATGCCGGATTGGTGTGTGGCGTGTGGATGTTGGTCGGTGCGAGCTCCAAGCTCTCATGAAGTACCGGGCTGTTCGCACCACGGTTGAGGACTTTTGAAGACGGTGTATGTTCTTCTTGCTGTTTGATAACTCAAGAGTGGATGATTTGCTGGTATTTCGATTCGGCAGATTTGCGTATCTGGGGGAGATGCGAGTGGGTTGTACAGTACAATCGATGCTAAGGAGTGGTCGGAGTGTCCGTATCTTGGGATGCGAAGTCCATTCCCGCG # Right flank : TACAGGATTAGCCGGTGTCCCCAATGCGGGGCAAGGTCAAGGCGAAGTGGGAGGAGCAGCATTATCTAGCTGCTTTGGTTTTTCGGCGCGGGGGACGCAGGTGCAAGCCGCATACTCTCGCGTTGAAGTCGAAGCCCGCAGTGGCGTGGGAGTGGCCGAAAGGCATGATGCTCGCCGCCGCGATTCGACGTTGGAATGCGAAGTGCAAAGGGTGATGGGCGGCTGGCGTGACAAGGCCGCTTGCCGGGACATGGACCCTGACTTGTTCTTCCCCGCCACGCGGCAGGAGGAACGATTGGCGCTCAAGGCCTGCTCCACGTGCCCGTCGATACGCGAATGCGCACGGTACGCGGCGGAACATGCACGGATAAACGGCTACCCGTTGCAAGGCGTATGGGGCTGGATAAACAGAAGCAAAGGCAAGAACAAGATCGGCTGGCAGGAAAGAGCAACCATGAGCATTACGAACAACCAGCGTGAGCTGATACTCAAATGGCACA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //