Array 1 341803-340274 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026009.1 Actinobacillus pleuropneumoniae strain App6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 341802 28 100.0 32 ............................ TCGTCTTGCGTGATTTGAGTGCGCTGAGAACG 341742 28 100.0 32 ............................ GCGATAACGAGCCTCACCAATAAAAACCTGAA 341682 28 100.0 32 ............................ TCATTTTGTGATTGGCGAGAAATTTATCAAAA 341622 28 100.0 32 ............................ TGATGAAATTGATAAAAGTTACCAGTCAATGG 341562 28 100.0 32 ............................ TTGTAGCGAATTGAATTTAAAAGCTGTTTAGT 341502 28 100.0 32 ............................ AGTTACAACTGTAATCAATGCTCGTTTTTCGT 341442 28 100.0 32 ............................ TCCTGAAAAAGCAAGCGGAAAAGCCAAAGGTA 341382 28 100.0 32 ............................ TCCAAGTGAGCCAGCTACAACTAAGCCAAAAT 341322 28 100.0 32 ............................ AAGTAGTTCTTGGCGTGCTTTAACGATTAAAT 341262 28 100.0 32 ............................ TGAAAAAACCTACCAACAAGCAACAGTTACAG 341202 28 100.0 32 ............................ AAATTGTGCTTATCTTTAACTTCACCGGTTTC 341142 28 100.0 32 ............................ TAGCGGGTGCAATCCACATTGCAGAAATCAAG 341082 28 100.0 33 ............................ TATTTAAAATAGTCTGATGTTGAATCTTCCGAT 341021 28 100.0 32 ............................ AGCAGAAAGCTCACACGGAATGTGGAATTTTT 340961 28 100.0 32 ............................ TTTGGGTTTCGAGGGTATGACATTATTTTTTC 340901 28 100.0 32 ............................ TCTATGCCGCAAGTGCGGCGTATTCTACTCTT 340841 28 100.0 32 ............................ GTGTAAAATCCCATGACGTAAGCGAACCGCTT 340781 28 96.4 32 ...................A........ TTATGCTGATAAAATGATTCTTAAAGAAATAA 340721 28 100.0 33 ............................ AACAAGCACGTATTAAAAGCGATTTTATCAAAT 340660 28 100.0 32 ............................ ATTCGCCCCGACGATAAATTTCTAACTGCTCC 340600 28 100.0 32 ............................ AAATTGTTGTAAAGACTCAACCTGATTACGCT 340540 28 100.0 32 ............................ ATTTAAAGGAGCGGAAGATACCTTGTGTAAAG 340480 28 100.0 32 ............................ GCCCGAACAAGATTCAATACTCTATTGATACC 340420 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 340360 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 340300 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.5 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTGCCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGCCAAAGTGCTATTCGCCGTACAGAGAAATTTTTAACTCAACAAGGGAAATGGACCGAAGATGTTCGCAAAGAGATGCTAATACATCAACAGAATCAAAAAACATTTCCCCATGTAAAACTCAAGAGCAGTAGTACTAAGCAGCATTTTGTATTAGCAATACGACAATTTCGTTTAGCAGAACCCGCTTCAGGCTTATTTAACGCATATGGATTAAGCCAAGTAGCAACCGTTCCGCATTTCTAACCCATTTTATAACCCTTTTTTCAAGAGAATTCATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCGGCAATGCGAGAGTTGTCAAAAGCAGGGGTTATGGTCGGTTTTTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAAATCGGTTGTGATTTTTTAGCCCTCAAAGTGAATATCGCCCCGTCGAATATCTACAGCAATGGTGTCGCTTTTGGTTTGACGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //