Array 1 43062-44597 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVMD01000257.1 Escherichia coli strain swine1 swine1_contig_402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43062 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 43123 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 43184 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 43245 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 43306 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 43367 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 43428 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 43489 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 43550 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 43611 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 43672 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 43733 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [43757] Deletion [43774] 43775 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 43836 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 43897 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 43958 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 44019 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 44080 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 44141 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 44202 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 44263 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 44324 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 44385 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 44447 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 44508 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 44569 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83857-82608 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVMD01000263.1 Escherichia coli strain swine1 swine1_contig_412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83856 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 83795 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 83734 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 83673 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 83612 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 83551 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 83490 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 83429 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 83368 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 83307 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 83246 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 83185 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 83124 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 83063 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 83002 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 82941 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 82880 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 82819 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 82758 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 82697 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 82636 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //