Array 1 224355-225282 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUJ01000193.1 Providencia sp. wls1919 4234, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 224355 28 100.0 32 ............................ TGCCCACCGTCTTTAATGACACGCATGTACTT 224415 28 100.0 32 ............................ TCAAAGTATTTCTGGCTAGCGTTGTAATCGAA 224475 28 100.0 32 ............................ TTTAGCCGCGAAAACCAAAACGCAGATAAATA 224535 28 100.0 32 ............................ ACAACGCCGCATTCATCGATAAGGTAATTCAA 224595 28 100.0 32 ............................ ATATACTGCCGCAAGCTTCATCGACGTTTCAG 224655 28 100.0 32 ............................ TCTAAAATTATTCGCGTATCAAACGAGTTACT 224715 28 100.0 32 ............................ TCAAAATGAGTATGGGTTGTTCTTTGGTAATG 224775 28 100.0 32 ............................ CAGCTCCATGCGGTATTATTTTTTCGTATATC 224835 28 100.0 32 ............................ ATTTTTGAATTTTGTTAAACGTGGTAGGTCGT 224895 28 100.0 32 ............................ TGAAATAACACCAAGAACCGGCTTGGTTGTCG 224955 28 100.0 32 ............................ ATTTCATACCGATATGTTTCGCTTCTCATGCT 225015 28 100.0 32 ............................ TGCGATCCATTCTTTGAAGAATTCAGGTTATA 225075 28 100.0 32 ............................ ATTAACTTTAATAATAGCCATGATTTTATTAT 225135 28 100.0 32 ............................ GCTATCGGCGTACCACAGTTTCAGAGGCATTG 225195 28 96.4 32 ..........A................. GTAATGCTGGCATTGTGGTTTTTTAACTGGTT 225255 28 89.3 0 .........TA.G............... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AATCCAGAATGCGGCGCGTAAAAGTGAGTTGTTAGAGACTAACTGGACAGCGACGACAACGGATTATTATAAAGAGAAGGCGATGTTCCAAGCTTCTCAAGATATTTTCAAAGATCTGAACAGCATGTCATTATTTGGCGGCCGTTAATTGATTTTTACCGCACCCTGTAGCAGTGGCATGTGTATCGGGTGCGGGTTTTCTTCCCAGTATTTTTTCATATCTCTTTTCAGTTTTTCCTTCTGATTTTTTCGCACGGCTTTTTAGCGTTTTAATATCTATATTCCAATCTATATTTCCGCTTTTCTCTTTCGAAATAACAGAGTTTATTTTTCTGTTGTTGGCTTATAGTATTTTTCACGATAAATTTGACCTTTGTTTTTTGCTCTTTAATAAACTGCTGAGTAAACAATAGGTTATTTGTTTACTGAAAATGGAAGGTATTTTGGTGTATTTTGCGCTAATCGGTTGTTGTGATTTGTTTTATCTCTGATAAGTTATA # Right flank : AAATATTATTAAGTCGGTGACTACAAACCCTCAACACTAATCAATCTTTTGATCTTAGCGGCTTGCTTAGATAATCCATCAAAAATGGCGTTGCTTATATGCTTAGGAAAATCTGCAGGTAGCTGAGGTAATAGGGTAGCTATAACGGCACCCGTTTTATCGGCCATATCAAGCATAAGTTGAGTTGCTATATTTTTTGAAAAACCGACATATTCAGCGGTGCTAATGAAATGACGAGGTTGAATCTGTGAAAAATGGTATTGCTTATTTTTCCCTTGCAACGCCATCGCCATTTTGGCTTTTCTGATCTCAATCCCCCGTATAGGGAAAGCGGACATAACATCATATAAAGGCGTTAAACGAAAAGACGATCCAGGCTCAATGAAGAGAGAGAAATTCTTGCCATGGCCGTCGATTGCGCCCAGCATCCAGAACAGAATTTGTGATTTAAAGAACATTTCCCTGTCTTCTTGTGGCATATTCGAGCCCAAAAGTAGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 236349-237553 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUJ01000193.1 Providencia sp. wls1919 4234, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================== ================== 236349 28 100.0 32 ............................ TGAACCTCTTAAAAAATCAGGCAAGAAAGAAG 236409 28 100.0 32 ............................ AGCACCATTGCCGCTATCTGGTTCAGTAGAAG 236469 28 100.0 32 ............................ ACTTAATGCCGTCTTTAAAACTACTAAATACT 236529 28 100.0 32 ............................ ACCAATCGCAATGGATTCCTGCCCCGAAGCAT 236589 28 100.0 32 ............................ AATATTGAAAAGGGTTATCTTTATCAGCAAGC 236649 28 100.0 32 ............................ TACACTAGCGCAAGTCGGATGTATAGAAATGT 236709 28 100.0 32 ............................ GTTAACCGAGGGAATCTCCCCGCTATTGTGCT 236769 28 100.0 32 ............................ TCAGATATTTTTCTCTCACCTTCCAGCACAAA 236829 28 100.0 32 ............................ ACCAGCATTTAATTAAACCAGTTAACGAAGAT 236889 28 100.0 32 ............................ CGTCAGAATCGAGCAAAAATAATCGTTTTGAC 236949 28 100.0 32 ............................ GAATGGGGGCAGACTTTAACAAAAAAACCCTG 237009 28 100.0 32 ............................ TTATTCCAGATTCTTACGGTTTCTAGCTTGTC 237069 28 96.4 32 ..........G................. TAGAGGGAGTAATGCGAACTCAGGACATATTG 237129 28 100.0 32 ............................ TTTTCAAGGAGAGAGACCGGATTCATGGCAAC 237189 28 92.9 32 ............GC.............. CCCAGCGCTTTAGCTATGTCACGGCAGGCGTT 237249 28 92.9 32 ..........G......T.......... ATTCGCATGAAACTTCACGCTTTGACCGTTTT 237309 28 82.1 32 ......G....GGC....T......... GGCAGAGTGGGAAGATTGCGCACCTACGGTAA 237369 26 82.1 85 ...T........GC.......-..-... TATATCTCCATCAACTAATTTTTAGTCTTTATCTTCTTGAATGATTTGCACTAAATTTGGCAGTGATTCTGTGAAATAACAGAAC 237480 27 71.4 20 AG.G....T..-T...AT.......... TGAACCATAGAATGGGTCTA Deletion [237527] 237527 27 75.0 0 A..T.......TG..........-C..T | ========== ====== ====== ====== ============================ ===================================================================================== ================== 20 28 94.6 34 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : ATAAAGTCAATACAAGCGGTTCCTGAAAATGCTCGGCCAGTGAGTTATATCCGCCGGCAAGTTAAAGGGGCATCGCGTATTGAGTCGGATATGCAGAAAAAAGCAGCGCTTTGGGCAAAAAAATCGGGGCAATCTTTAGAGCAATGTTTGGCAGATCTCGAAAAGTCTCGCCCAACGAAACAGAGTCGATTGCCATTTATCTGGGTGGAAAGCCAACACAGTAAAAGTGAGCAACAGGGTAGCCGACCTTTCCCGTTATTTATTCAATGTATTGAAGTAGATAAAGCGGTTGAAGGAACATTTAATTGTTATGGACTCAGTCAGACTAACAATGATGGTCAAATATTTACTACCGTTCCTCATTTTTGACCTTCGTTTTTTGCTCTTTAATAACAAGGCATAAAATCAATAAGTTACAGTGGTCAGCAAAAATAAAGGGTATTTTATTAAAAATGCTCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTTTATA # Right flank : TGGCGTAAGACCTGAACAATAGAATGGGTTTAATGCCGAGTGATATCGGATGACAAAAATCATATGCCAACTGATTGATGGGAAAAAGCAATGCATTACGAAATTATTATTAAGATCCTCTGCGTGACCGTAACTTTCAAAGCAACAAACGTATCAACTTCCCTCAAACCCACAAATTAAACATCAGCGACAGCTGCTCAAACGCTTGATGGATCAGGCGTTCTGTATAGCGTGGAAGGATAGAGATAATCAGCCCCAACATGCTGATACCGATAGTTAATGTGAGAGGGAAACCCACCACAAACACGGATAACTGTGGCGTCATTCGGTTTAGAATACCGAGGGACAAGTTGAGAATTAAAAACAGCGTAATAAACGGCAGGGCAAGCATTAAACCATTGATAAAAATAGTATTAGCAAATTGTAAAAATACCCAAAAACCATCGCGGTGCAGGGGCGCGGTTTGGATAGGGATCAGCTCAAACGAGTTCGTCAGAATA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //