Array 1 152905-153544 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQH01000005.1 Aerococcus urinae NBRC 15544 = CCUG 36881 strain NBRC 15544, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152905 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 152966 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 153028 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 153089 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 153150 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 153211 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 153272 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 153333 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 153394 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 153455 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 153516 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.8 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAACAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 185381-184561 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQH01000003.1 Aerococcus urinae NBRC 15544 = CCUG 36881 strain NBRC 15544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185380 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 185319 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 185258 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 185197 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 185136 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 185075 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 185014 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 184953 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 184891 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 184830 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 184769 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 184708 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 184647 28 93.1 32 ......................A-..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 184587 27 86.2 0 ....................--....TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : GTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 205640-204331 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQH01000003.1 Aerococcus urinae NBRC 15544 = CCUG 36881 strain NBRC 15544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 205639 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 205578 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 205517 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 205456 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 205395 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 205334 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 205273 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 205212 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 205150 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 205089 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 205028 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 204967 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 204906 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 204845 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 204784 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 204723 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 204663 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 204602 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 204541 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 204480 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 204420 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 204359 28 75.9 0 ........-..C......A.T..T...TG | A [204334] ========== ====== ====== ====== ============================= ================================= ================== 22 29 97.0 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : AAAGAATTAGGAGGATAAAAACATGCCAGAA # Right flank : AAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //