Array 1 1978217-1977792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070345.1 Bacillus sp. PDNC022 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1978216 32 100.0 33 ................................ ACTGCTTCAATGTATTTTTTAACAAGCAGATTG 1978151 32 93.8 34 ...........T.......T............ ATGATCATTAATTCTAGTGAATTGCCCGTTACGC 1978085 32 96.9 33 ..................A............. CTCTGTAATATCAATCAGGTGGCTAGTGATCTT 1978020 32 100.0 33 ................................ ATTTTTGGTGATATACAATTTTAATGATGAATC 1977955 32 96.9 35 ...........T.................... TTAGGACAATCTTCATACCTCGCGATGACTTCGAG 1977888 32 93.8 33 ...........T.......T............ TTGCATTTTCTTGGAGTCTTTCTGTCTCTTCGC 1977823 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 97.3 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AAAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACTGTTTTATTCGACAAAAATAAGAAAAATTGTATATTTTCAGGAGTGAAAACAAAATTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGGATGGATTAAAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACCAAGAAAAAGTAGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : GGTGAATGGTGGGAAAAGACAAGAAAGCTTGGTGTTGCACTCAACATAAGTGCATAGATCACTGTTTCTGCGAATTACATAAATTCAAATATCTATCCAGTTCAAAATTTACACAAATGAATAATCAAAACAATGTACTTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCGTAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCGGTGTCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGC # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1979510-1979347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070345.1 Bacillus sp. PDNC022 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1979509 32 100.0 34 ................................ TAATAGTTAGTGTGTTTAGTAGTTTTTTCATACA 1979443 32 93.8 33 A..........T.................... TCTTCAGCATAATTTTCTAGCTCCACCAATTTC 1979378 32 90.6 0 ...........................A.T.A | ========== ====== ====== ====== ================================ ================================== ================== 3 32 94.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGCCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGATTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTATCAGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGAAACATTCGCACCGTTTCATTCAAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTAAGGATTTTGACGATCATTCCCTAAAAAATATTATAATTAGGGCGAAAATCGCA # Right flank : TTGCGAAAACATAACTCTGCCTCCTGACTCAGTAGTCAAGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGAATGATTAACAAGTTTCAATAGATTTAAATAATTAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCCGTCGCACTCTACATGAGTGCGTAGATTGAAATCAAAACAGTCTCTATTTATTACATAGTTTGAAGGGTCGCACTCTACATGAGTGCGTGGATTGAAATTATCGGCAGCCGTTGGATAAATCATGATGCCCTGCCGTCGCACTCTATATGAGTCTGAGGACTGAAATTCTCGTCAGTAGGTGGCTTGAAAAATAT # Questionable array : NO Score: 6.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1987480-1987119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070345.1 Bacillus sp. PDNC022 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1987479 32 100.0 34 ................................ AAAAATATTTATTGTCTCGTCTTTCACTATATTT 1987413 32 96.9 35 ................A............... AAGAAGAGAAGAGTATATTATATGTGAAAATACCA 1987346 32 100.0 35 ................................ CATTCAATGGTCTATATTCTGTTTCAAGGTTTGCT 1987279 32 96.9 32 ...........C.................... TTCCATCTGCAACCGTTGTTTATATCCATCAA 1987215 32 90.6 33 ...........C.A.......C.......... TTCGGTTTGTAACTATATTTCGCACCTCTTACA 1987150 32 81.2 0 ...........C.A.......C.AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 94.3 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CTCTACATGAGTGCGTGGATTGAAATATCTTGATTTATCGTCTTTGAATCCATATGAGCGTCGCACTCTACATGAGTGCGTGGATTGAAATATGTTGTTGTGCATATTGTGTCTGATTAGCTTTTGTCGCACTCTATCTGAATGTGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAAATCTGTCTCGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACATAAATGGGTAAAAATGTATATTTTGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAAACGCA # Right flank : GATTGTCTCTTAAACGGGTATAGCCACCTCAAATCCATCTTCTTACAATATCCTCTTTCAATTAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAGTGAATGATGAAGGAGGAATTGTTTTGGGTGAAACGGAGCGAACCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTAGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGTTGGAGTTTTTTCGGAAAATTATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAACAGTA # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1988186-1987823 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070345.1 Bacillus sp. PDNC022 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1988185 32 100.0 34 ................................ ATTTCCGATTCGATGACAGGCACGTCCACTTTTT 1988119 32 100.0 35 ................................ CCTTTGACAGTCACAAATTTAACCGAAGAATCTTC 1988052 32 100.0 35 ................................ ATGCATGTATCTATATTGCGCCCACCCGAATGATG 1987985 32 100.0 33 ................................ ATCTTGATTTATCGTCTTTGAATCCATATGAGC 1987920 32 100.0 34 ................................ ATGTTGTTGTGCATATTGTGTCTGATTAGCTTTT 1987854 32 78.1 0 ...........TC...A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 96.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGGAGACAAAATCACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAACTCATCGAAAAAATAGACCGGCTGATTTATCAAGAGGGGCCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAAGCTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTTATTCGACAAAATTGAGAGAAAATGTATATTTTATGAAGGGAAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTGAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAAATCTGTCTCGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACATAAATGGGTAAAAATGTATATTTTGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAAACGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATAAAAATATTTATTGTCTCGTCTTTCACTATATTTGTCGCACTCTATATGAATGCGTGGATTGAAATAAGAAGAGAAGAGTATATTATATGTGAAAATACCAGTCGCACTCTATATGAGTGCGTGG # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //