Array 1 118516-116837 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBZ01000003.1 Salmonella enterica strain BCW_6082 NODE_3_length_375532_cov_2.27808, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118515 29 100.0 32 ............................. ATTATTATAATTGGATGTTACCATTATTTTGC 118454 29 100.0 32 ............................. GAGTTAAATTAATGAGACTATCCGCTTTTAAT 118393 29 100.0 32 ............................. CCGGATCCCCTATTCCGCGATGAGTACGCAAA 118332 29 100.0 33 ............................. CGGGGTTGCACCGAGTTAGTAGCATACTTGCGG 118270 29 100.0 32 ............................. GGGGAAAATTGCTGTGTGATATAGACGAATTG 118209 29 100.0 32 ............................. GCGGAAGCGCCAGGATACCCTGAAACGCTACC 118148 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAA 118087 29 100.0 32 ............................. TAAATACTCAATCATTAACCGAAGTTACGTTT 118026 29 100.0 33 ............................. TCGCAACCCGCCTTATTTAATTATTGAAGCGGC 117964 29 100.0 32 ............................. GAATATAGTTTCATCGTTATTTGTGACGTCAT 117903 29 100.0 32 ............................. GGTAAAGAGCCTAAATATTTTATATTAGATGA 117842 29 100.0 32 ............................. CGTAAATACCACTACTGGTTGATTGCATTTGC 117781 29 100.0 32 ............................. AATTATTAACATTATTTGTTGTCTGTTGTTTT 117720 29 100.0 32 ............................. GCGGCACCTACGTCTGTAAAGAGCTGGTTTAT 117659 29 100.0 32 ............................. AATGAACGGAAGATATGGAGCACAAAAATGAA 117598 29 100.0 32 ............................. GCTGAGTATGCTGCTGATTTTCCTGGTGTTAA 117537 29 100.0 32 ............................. TCGGGCAAAAAAAGCGTGTTCACCGCTGCGCC 117476 29 100.0 32 ............................. GTGCGTGTAGGGAATGATCAGCGTATCGGACA 117415 29 100.0 32 ............................. CAACTTTGGATCGTTTATATTCATCGATATCC 117354 29 100.0 32 ............................. CACCTGGTAAATATTTTTCTAATCAGTCGATA 117293 29 100.0 32 ............................. TACCGAAAAATATTCAGTCCCCTGAAGCGCGT 117232 29 100.0 32 ............................. CCAGCTGACAACCTGGCGTTTGTGGTTCGTTA 117171 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAAGATGAGC 117110 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGCAGCG 117049 29 100.0 32 ............................. ACGCCTTCGTAGCATACCAGCTTGCTTATAAA 116988 29 100.0 32 ............................. TTTTGGGCGGCCCTGGACACCCGACGCGGCTC 116927 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 116866 29 96.6 0 ............T................ | A [116839] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 136495-135063 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBZ01000003.1 Salmonella enterica strain BCW_6082 NODE_3_length_375532_cov_2.27808, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136494 29 100.0 32 ............................. ATTTATAAATTCAGTAGTAGAAAATAATTCAT 136433 29 100.0 32 ............................. ATGGAACTGTTGATAAAACTATAGACGACGAA 136372 29 100.0 32 ............................. ATCAACCCTCAAATGTGGTTATTTGCGCAGGC 136311 29 100.0 32 ............................. GGCGCGCCTGCGCCCTCTGGGACTCGTGTCAA 136250 29 100.0 32 ............................. GTTCGGATATAGAATATAATTTAAAATCGATG 136189 29 100.0 32 ............................. CATTACAGTCAGCTACATTAAACAATGTTCGT 136128 29 100.0 32 ............................. GGTAATCATAATCAGATGCATCCACATATTTT 136067 29 100.0 32 ............................. AACGTCTTTATGCGGTTTTGTGTCGCCGGAAA 136006 29 100.0 33 ............................. AATTCTCGTTTACACACACATCACCGGCTACGC 135944 29 100.0 32 ............................. TGTGATTTACCGCTTTCCTTATTAATCGTTCG 135883 29 96.6 32 ............................T GGCGTAATGTTTCCATTGCAGAAACTGCGGGC 135822 29 100.0 32 ............................. TTACGAATGAGAACCCATTTAGAGGTCGAATC 135761 29 100.0 32 ............................. TTGCCTTTAAAGTGGGTGTGAGCATGAGACAG 135700 29 100.0 32 ............................. TTCCGCCATGACCGTTTCAGCCTCCAGCTTTC 135639 29 100.0 32 ............................. ACCAGAAAATTTAACTATATCACCTTCGGACA 135578 29 100.0 32 ............................. GTCCGTTCGTCGGCAGGCGTGGTCAGGTCAGG 135517 29 100.0 32 ............................. CGAGATGTCGCGGTCACTGGCTTTAATCCAGC 135456 29 100.0 32 ............................. ACCGTCAGAACCCTCACACCACGCTTCGTGCT 135395 29 100.0 32 ............................. CAGTGATGAATGCAGCCGGTAACACGGCTGTG 135334 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 135273 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 135212 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 135151 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 135090 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //