Array 1 2195994-2195043 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP087379.1 Mannheimia haemolytica strain IMT47952 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
   2195993	    32	 100.0	    33	................................	TACAACTGGAGCTTTTTTCAGTGAGTTAATCAC  	
   2195928	    32	 100.0	    34	................................	GTTATCACGTGGGTTTAAGCAATATAAAATGGTT 	
   2195862	    32	 100.0	    34	................................	TAAAGATACACAATATTTCCAATACTTCATTTGA 	
   2195796	    32	 100.0	    33	................................	CACAGCTAAAAACTGAAAGAGAATATGTATTAG  	
   2195731	    32	 100.0	    35	................................	ATCTTTCATCGGTTTGGTTGCATCAATAAATGGTT	
   2195664	    32	 100.0	    33	................................	TTTGGATAGCTTGATTGGGTCGCCATCAAACAG  	
   2195599	    32	 100.0	    34	................................	CTGTGATGCAATAGATGCGAGAGCAACTTCTTGG 	
   2195533	    32	 100.0	    34	................................	CTGAAATATCGCATAACCCTAGCACATCCGTTTC 	
   2195467	    32	 100.0	    35	................................	AATGTGATAAAATCAAATTTCCCTACACATTCTTA	
   2195400	    32	 100.0	    32	................................	TGGTTGAAGTGAAGCATCTGTGTAGTCTTCGT   	
   2195336	    32	 100.0	    33	................................	AATCAGAATCCCAGAGCATTTGTTAAATAAATT  	
   2195271	    32	 100.0	    34	................................	GGTTTATAGGTTAAACGCCCCACATTATAATCAA 	
   2195205	    32	 100.0	    33	................................	TTTTCAGCAGCCGCTTTCCAACGCCGTGCCGTG  	
   2195140	    32	 100.0	    34	................................	TGCGGTTAATCCGCTTTTATCAACAATGTACAAC 	
   2195074	    32	  96.9	     0	.......................T........	|                                  	
==========	======	======	======	================================	===================================	==================
        15	    32	  99.8	    34	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                   	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAGTATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTGTAAGGA
# Right flank :  GGTGTACCCACAAATTCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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