Array 1 1254573-1253217 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134094.1 Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1254572 36 100.0 30 .................................... AAGCCCTCTCTTTCCTTTTTTTGCTGAAGT 1254506 36 100.0 30 .................................... AAAGATTTCCCGCGTATTGAAACGGGAGGT 1254440 36 100.0 30 .................................... TTCCAATTTCTTTTATTTCAGTAGTCTTCA 1254374 36 100.0 30 .................................... TGTTAATCCAGTGTATGGCAAAAAAGGCGT 1254308 36 100.0 30 .................................... TGTTAATCCAGTGTATGGCAAAAAAGGCGT 1254242 36 100.0 30 .................................... ATATATTGTTAAAAAAGCTTCGAAATCGTT 1254176 36 100.0 30 .................................... CTTAGATGGGGTGTTGGTTCAAGTAACACT 1254110 36 100.0 30 .................................... ATGACCAAAAAGGTCCGCTATACAAGGAGT 1254044 36 100.0 30 .................................... TATTGAAAGGAATACAAGTAAAAAAAACCT 1253978 36 100.0 30 .................................... AGTGAAAATAAAAAACGAAAGGACACCCCC 1253912 36 100.0 30 .................................... TTTTATGATTAACCGCAAGTCCAAAAACAA 1253846 36 100.0 30 .................................... ATATGTAGATGCATGCACGAACGTATTAGA 1253780 36 100.0 30 .................................... ATCAACTCAACATCAAGCCTCCGAAAGCCT 1253714 36 100.0 30 .................................... AGATTTTAGATAAAAACTTGCAATGGAATC 1253648 36 100.0 30 .................................... AGCAAACACCTCTTTAACGCTGGCGCCTAA 1253582 36 100.0 30 .................................... TTCTCCTGTTTATATCGCTCTATTCTCAAT 1253516 36 100.0 30 .................................... TAAGTTGTGATGTAAGGTTGCAAGTTATTA 1253450 36 100.0 30 .................................... ACGGTAAGACTCGCTACAACAAAAATTTAT 1253384 36 100.0 30 .................................... ATCTCAATCAACTCTAACAAGTTTTGTAAC 1253318 36 100.0 30 .................................... TATTCATAAATCAGCAATTTATAGACCAGA 1253252 36 86.1 0 ............................TTT..TT. | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.3 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : CTTATTATTGACCTATACAACCGTGAAATCATCGGCCTGTCTCTTGGTTGGCACAAGACCGCTGAACTCGTTAAGCAAGCCATACAAAGCATCCCTTACGCCCTGACCAAAGTCAAGATGTTCCATTCAGATCGTGGCAAAGAGTTTGATAATCAGTTAATTGATGAAATATTGAAAGCCTTTGGAATCACACGTTCGCTTAGTCAGGCTGGTTGTCCTTATGACAATGCCGTAGCTGAAAGTACGTATCGTGCTTTCAAAATTGAATTTGTTTATCAAGAAACTTTTCAATCGCTGGAAGAACTAGCTCTTAAGACTAAAGACTATGTTCATTGGTGGAATTACCACCGCATTCATGGTAGTCTCAACTACCAAACACCAATGACTAAAAGATTAATTGCCTAGAAAACACTTTATAAATGTTGTACAGAAAAGTGTTGCCTTTTCATTGTTTTGAATGGTCCCAAAACAACCAGATGCCAGTTGATTTATTGCAGATT # Right flank : AACATCGTCAATGATAACTTGAGAGAGAGGGATAAAGACCATATCCTTATGCCTTTCTATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTAAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGATTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGCTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGAACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCCGATTCAAGAGACTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1542950-1542050 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134094.1 Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1542949 32 100.0 33 ................................ TTGTAGGTTTTGCCATCCACCTCAAAATCATCC 1542884 32 100.0 35 ................................ CAATAAAACAGGAGAAATTAACATATGGTAACATC 1542817 32 100.0 35 ................................ TCTCTATACCTCTTGTCAGCCTCCATCTGTTTTTC 1542750 32 100.0 35 ................................ TATTTTATCAATTAGCAGCTGTTTTAATGTCTGTT 1542683 32 100.0 37 ................................ AATGCAAGATTAAGCATCACACCACTATCTTTCCCAC 1542614 32 100.0 35 ................................ TTCGGGTAGCGTATCAAGTAAAAACTCCATGTATT 1542547 32 100.0 35 ................................ CGACAACTTTTTAAATTCTCTAACAGGCATACCTT 1542480 32 100.0 34 ................................ CTTTGGCACGAGATAGTGCGCTATCAATTTTTTT 1542414 32 100.0 36 ................................ TATTTGCAGAGGATTAGACGGTCATAAATTTAAACT 1542346 32 100.0 34 ................................ TGGATTAATTTTATCTGTCATCCTTTTTCCTCTC 1542280 32 100.0 35 ................................ ACTACCACTCAAAAGTCTCATCATCCCAACGACTT 1542213 32 96.9 33 .....................C.......... AAATCAGAAATCGTTAATGGTCGTAGAAGATTT 1542148 32 100.0 35 ................................ TTCGATGATCTCAACCCGAGGAGCAACGAAAGGTC 1542081 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 99.1 35 GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATTTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGTTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAACGTTTAGTGCGACTCGAGGTTTCACAGAAGAACATTGCTTGCTCGCGCAAAAATCACTTCAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTTTGCCATACGTTTCTCTATAAACTGCGTTATTTGGCGCA # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTGTCTTCTCCCCTCTCTTCCCCCTCACATATGCTATAATAAGCTTAATAAATGCATGGTAAAGGAGTTAGGATGGATAAGGTTCGGTATGGGATCGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATACGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTACTGGCAGGCAAGCATGTTCTGGTGGAAAAACCATTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCACGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //