Array 1 2888710-2890934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZM010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA10 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2888710 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 2888771 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 2888832 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 2888893 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 2888954 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 2889015 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 2889076 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 2889137 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 2889198 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 2889259 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 2889320 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 2889381 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 2889442 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 2889503 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2889564 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 2889625 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2889686 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 2889747 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 2889808 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 2889869 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2889930 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2889991 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 2890052 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 2890113 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2890174 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 2890235 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2890296 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 2890358 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 2890419 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 2890480 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 2890541 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 2890602 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 2890663 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2890724 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2890785 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2890846 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2890907 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2907067-2908237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZM010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA10 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2907067 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2907128 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 2907189 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 2907250 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 2907311 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 2907372 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 2907433 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 2907494 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 2907555 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2907616 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2907677 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2907739 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 2907800 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [2907842] 2907842 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2907903 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2907964 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2908025 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2908086 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2908147 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2908208 29 96.6 0 A............................ | A [2908234] ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //