Array 1 65632-63772 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKOB01000005.1 Escherichia coli strain MOD1-EC1987 MOD1-EC1987_5_length_196152_cov_47.0553, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65631 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 65570 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 65509 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 65448 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 65387 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 65326 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 65265 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 65204 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 65143 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 65082 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 65021 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 64959 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 64898 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 64837 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 64776 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 64715 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 64654 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 64593 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 64532 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 64471 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 64410 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 64349 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 64288 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 64227 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 64166 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 64105 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 64044 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 63983 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 63922 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 63861 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 63800 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91546-91334 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKOB01000005.1 Escherichia coli strain MOD1-EC1987 MOD1-EC1987_5_length_196152_cov_47.0553, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91545 29 96.6 32 .......T..................... AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 91484 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 91423 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 91362 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //