Array 1 1-1523 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIU01000204.1 Acinetobacter baumannii strain ABOB04_a contig-3000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 61 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 121 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 181 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 241 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 301 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 361 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 421 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 481 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 541 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 601 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 661 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 721 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 781 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 841 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 901 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 961 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1021 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1081 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1141 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1201 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1261 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1321 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1376 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1436 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1497 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 97.8 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-749 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIU01000081.1 Acinetobacter baumannii strain ABOB04_a contig-1000079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 61 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 121 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 181 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 241 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 301 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 361 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 421 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 481 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 541 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 601 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 661 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 721 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 13 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4831-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIU01000341.1 Acinetobacter baumannii strain ABOB04_a contig-5000074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4830 28 100.0 32 ............................ TTCTTCTCTCTGATTACAAGCTCCCTGGGGCA 4770 28 100.0 32 ............................ ATAAGGACGATGCAAGTGATAGTGCTCACCGA 4710 28 100.0 32 ............................ ATGCAGATAAAACAGTAAAACTCTATGAAAGC 4650 28 100.0 32 ............................ ACTGGTTAATTTTAATAATGCGGATGGATATT 4590 28 100.0 32 ............................ TCTTAATCTCTTCAATGTTCATCTTCAACCCT 4530 28 100.0 32 ............................ AAAACGTTGAACATTAGTAAGTGTTAGAACAC 4470 28 100.0 32 ............................ TTACGATGGCCAACAGAAATATTAGACATATA 4410 28 100.0 32 ............................ GATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 4350 28 100.0 32 ............................ AATCCAAACAGCAAAACCGATGATACCTGCAA 4290 28 100.0 32 ............................ AGTGGGCTTATATCTCTTCTATAAAAAACGGA 4230 28 100.0 32 ............................ AATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 4170 28 100.0 32 ............................ GGAGTCAGGCACACTATTAGATAGCAGTGTGC 4110 28 100.0 32 ............................ ATGATGAACCTGTCTTACCTTCAGATCCTTCT 4050 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 3990 28 100.0 32 ............................ TCAAGTGCAGATGCAGCCTAATTATTCTTCTT 3930 28 100.0 32 ............................ AAGAACGTTTGGCAGCAAAAGGAACATTACCA 3870 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 3810 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 3750 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 3690 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 3630 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 3570 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 3510 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 3450 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 3390 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 3330 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 3270 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 3210 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 3150 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 3090 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 3030 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 2970 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 2910 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 2848 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 2788 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 2728 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 2668 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 2608 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 2548 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 2488 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 2428 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 2368 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 2308 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 2248 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 2188 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 2128 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 2068 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 2008 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 1948 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 1888 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 1828 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 1768 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 1708 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 1648 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 1588 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 1528 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 1468 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 1408 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 1348 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 1288 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 1228 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 1168 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 1108 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 1048 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 988 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 928 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 868 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 808 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 748 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 688 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 628 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 568 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 508 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 448 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 388 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 328 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 268 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 208 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 148 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 88 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 28 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ================================== ================== 81 28 95.9 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : A # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //