Array 1 232322-232489 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ957710.1 Streptococcus agalactiae strain PSS_7632b Scaffold136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 232322 36 100.0 30 .................................... AAAAATACTGTAAAATCGTAATCTACGTAA 232388 36 100.0 30 .................................... AATGTTCTGAGTTACCTTTCTCGACACGCC 232454 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTTACAGGATTACCAAGAAGCACAACTTT # Right flank : CACGATGTTTGTGAAAGACAAAATCTTCGCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAGAAAAAATCATGGCGAGAGCCTTGCTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGATATTTGGAAAGATTCTGATTTTGGTAAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTAATATTGGTCAGAATAAGCTATTTCAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTTGATCTTATTCACGTTTCGTGAAGTTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 232715-232882 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ957710.1 Streptococcus agalactiae strain PSS_7632b Scaffold136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 232715 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 232781 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 232847 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTTACAGGATTACCAAGAAGCACAACTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAAAATACTGTAAAATCGTAATCTACGTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAATGTTCTGAGTTACCTTTCTCGACACGCCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACGATGTTTGTGAAAGACAAAATCTTCGCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAGAAAAAATCATGGCGAGAGCCTTGCTCA # Right flank : CGTTGATCTTATTCACGTTTCGTGAAGTTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATCCATTCCTACAGGAATCACTCAAAATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATACCGAAAGAGTGGAAAAACTACTCAGTGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGCGGATGTCAATAGATTTCTACGAACAAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 233362-233793 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ957710.1 Streptococcus agalactiae strain PSS_7632b Scaffold136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 233362 36 86.1 30 NNNNN............................... ATCAACTGCTAGATACGATAACACGACAAC 233428 36 100.0 30 .................................... AAACTTTAATTCGATTATGTTTTGGTTATC 233494 36 100.0 30 .................................... AACCACCTGATGGATTATCAAGTGATAAAT 233560 36 100.0 30 .................................... GTAAGTATTTTAAACGTGACTATTCCTGAA 233626 36 100.0 30 .................................... ATTTTATTATGGAAAGTAATCATTATTTTT 233692 36 100.0 30 .................................... ACCGACCATGTCAGTCCAACGGTATTTTGT 233758 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TGTTTCGAATGGTTCCAAAACGTTGATCTTATTCACGTTTCGTGAAGTTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATCCATTCCTACAGGAATCACTCAAAATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATACCGAAAGAGTGGAAAAACTACTCAGTGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGCGGATGTCAATAGATTTCTACGAACAAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGTGCTGTTTCGAATGGTTCCAAAACTTTTTACCAATGCTTCCATATCGCTTATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGGTTATACATTTACTAATCCATCAGCATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGGCGAAAAATGGTATTATCTCAAAGGCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACTTGACGAATTGAAGATGACGGAATTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 233947-234180 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ957710.1 Streptococcus agalactiae strain PSS_7632b Scaffold136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 233947 36 100.0 30 .................................... AGGTTATACATTTACTAATCCATCAGCATT 234013 36 100.0 30 .................................... AGGCGAAAAATGGTATTATCTCAAAGGCAA 234079 36 100.0 30 .................................... AACTTGACGAATTGAAGATGACGGAATTTA 234145 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TCGAATGGTTCCAAAACAAACTTTAATTCGATTATGTTTTGGTTATCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACCACCTGATGGATTATCAAGTGATAAATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTAAGTATTTTAAACGTGACTATTCCTGAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTTTATTATGGAAAGTAATCATTATTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACCGACCATGTCAGTCCAACGGTATTTTGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGTGCTGTTTCGAATGGTTCCAAAACTTTTTACCAATGCTTCCATATCGCTTATAT # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //