Array 1 107862-106385 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMF01000007.1 Salmonella enterica strain BCW_1760 NODE_7_length_213967_cov_3.13732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107861 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107800 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107738 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107677 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107616 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107555 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107494 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107433 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107372 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107311 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107250 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107189 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107128 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107066 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106963 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106902 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106841 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106780 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106719 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106658 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106597 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106536 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106475 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106414 29 96.6 0 A............................ | A [106387] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125670-123994 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMF01000007.1 Salmonella enterica strain BCW_1760 NODE_7_length_213967_cov_3.13732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125669 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125608 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125547 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125486 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125425 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125364 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125303 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125242 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125181 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125120 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125059 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124998 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124937 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124876 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124815 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124754 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124693 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124632 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124571 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124509 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124448 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124387 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124326 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124265 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124204 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124143 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124082 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124021 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //