Array 1 309270-311628 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYU01000001.1 Listeria innocua strain Lin13-009 Listeria_innocua_Lin13_009_Contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 309270 29 100.0 35 ............................. AAGATCCGAAACGTCCGATTGGCTCCTTCATTTTC 309334 29 100.0 36 ............................. AAAGATAACTATGATTTTGCTGATGTTTCTGACACG 309399 29 100.0 35 ............................. AGCGCTGCTTTGAGTAAGTTATTTTCTTCTACTGC 309463 29 100.0 37 ............................. AAAATATTGGGGTGTTTAGCAAGTTGTAAGACGCGAT 309529 29 100.0 35 ............................. GTAAAATGTACCATTCGCATTTTCATCTGTTTTAA 309593 29 100.0 35 ............................. CAGCCACATAATGGACTGGCGCCATTTTACCTTCG 309657 29 100.0 36 ............................. CATACTGTTTCCAGAACAGTTGTTTACTGATGTTCC 309722 29 100.0 36 ............................. TTAATAAAAATAGCTTGGGGGTAAGATGATGCTAAC 309787 29 100.0 37 ............................. TTTTTAGCGTTATTCTTAATCGTAGCACCAGCGTTTT 309853 29 100.0 34 ............................. CTGATTAAGAGTTGGTTTTGTGTTGAGCAGTTAC 309916 29 100.0 34 ............................. ATAAGTCCGGCTACTTTCGAAAACACGCTACTAA 309979 29 100.0 34 ............................. TGTTCTTCGTAAAACCGTTTGTTTTGAGTACATT 310042 29 96.6 36 A............................ TCACTTTTACTGTTTTAAGAACACTGGATAATCAAA 310107 29 100.0 36 ............................. ATTGGTTTGATAAAGATCAAAACCAAGTTGCTGAAA 310172 29 100.0 35 ............................. GAAGAAGGGGTTATGGAAAAGGAACTAATTATAAA 310236 29 100.0 35 ............................. ATATACGAGTGAAAGGAAGCGTCTAAATGACTAAG 310300 29 100.0 36 ............................. ACCTTCATAAGCAATGCTAATAACTTCAAAAGTCTT 310365 29 100.0 35 ............................. CGACAAGGAGATTGCTTTATTGAAACGGGAAGATA 310429 29 100.0 35 ............................. ATCGATGCCGCAGTTTCGAAAGCAAAAGCTTACAC 310493 29 96.6 34 ......G...................... ACAATTTGTGAGTTCAGTAGGTTTATCCCCACTC 310556 29 100.0 35 ............................. AAAGGTTCGGACTTGGAGAAAGTAGCCGACTATTT 310620 29 100.0 36 ............................. GTTGTCCATATGTCTAATTCTTTGATATACACTATT 310685 29 100.0 38 ............................. CTTCCTTTTTAGAGGCCTTTTCCTTCTCTTTTGCAGCA 310752 29 96.6 36 .............G............... TTATGAATTAGTTTTGTTTTATACGTTGTTTTTACA 310817 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 310881 29 100.0 36 ............................. CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 310946 29 100.0 37 ............................. AAATACTTGCAAGTTTATCTTGATGCTTCTGACTATC 311012 29 100.0 36 ............................. CACGGTATCTACAATGAGCATCTGTCAAAAGACTGC 311077 29 100.0 36 ............................. TCAAGTGGAAATCGAATATAAAGATAATCATTTTTT 311142 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 311206 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 311269 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 311334 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 311400 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 311465 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 311534 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 311599 29 93.1 0 .......................A....C | C [311622] ========== ====== ====== ====== ============================= ======================================== ================== 37 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACATTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCTGCCACAACTACACAGCTTAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTGGCTGCGAGTTTGGTATTGGAGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGTCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //