Array 1 47189-45965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPN01000009.1 Neisseria meningitidis strain NmLN16 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 47188 36 94.4 30 ........G...A....................... GTTTCTTCCCATATACTGCTGTTCAAACTG 47122 36 97.2 30 ............A....................... CGGTGCGGCGGAATGCCAGCCGGTGCCGCT 47056 36 97.2 30 ............A....................... CATAGTTCACACTATATCAAACTATTTGTT 46990 36 97.2 30 ............A....................... CCCACGAACCGGCGTGGGCTTCATTCGTGG 46924 36 97.2 30 ............A....................... ATAAGCATATTTAAAAATCCTGTTAATTAA 46858 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 46792 36 100.0 30 .................................... GGCAAGAAGCTGCGTGAGGCAGTCAAGGAA 46726 36 100.0 30 .................................... TAGCCGTCGTGGGCATCAAATACATCATGG 46660 36 100.0 30 .................................... ATCTTTAACGTTATTAACATATTCTTCAAA 46594 36 100.0 30 .................................... CCACTGCCGTCTTCATTGCGCCATGCCGTG 46528 36 100.0 30 .................................... TATCGCCCACGAGAGCCAAATCTCAACTCC 46462 36 100.0 30 .................................... TTGAGAAGGCGGCGCAACGCGAAACGCGCG 46396 36 100.0 30 .................................... GCCACGGCAACGGAACAGCAGGGCGCGAGC 46330 36 100.0 30 .................................... AAGCGTGCAAAACATAATGGGGGGTTGCTT 46264 36 100.0 30 .................................... ACTTCGGGAAATCTACTGTAATCGGACATA 46198 36 100.0 30 .................................... CTCCCATTATGTCCCACCTCCTACCACGCC 46132 36 100.0 30 .................................... ACAAACGCACCTACTTCATCAGGCTCGTTA 46066 36 100.0 30 .................................... GATGATTCGTACAATCAGCATTTTCAACAG 46000 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGAAACGGTCGATGTGTTTAGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //