Array 1 2690-663 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKFV01000120.1 Lacticaseibacillus paracasei strain FAM18175 FAM18175_scaffold_0120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2689 32 100.0 34 ................................ TGTCAATCCTCAAAGGCACGATGTGATCAGTGAC 2623 32 100.0 34 ................................ TGTCAATCCTCAAAGGCACGATGTGATCAGTGAC 2557 32 100.0 33 ................................ CTTTCTAGATTACATGACGTCTTCTGGCGCCGG 2492 32 100.0 35 ................................ TTTAACACTTCCAGCACATTGGCCCGGGTTGCACT 2425 32 100.0 35 ................................ TTTCCATCATCCTTAGGCTGGTTTTCAGCTGGCTT 2358 32 100.0 33 ................................ TGCATTTCAAAGATGTTGATTAGGTGAGTGATC 2293 32 100.0 34 ................................ AACCGGTGCTTCTCAACAAAATCAATCAGCCATG 2227 32 100.0 36 ................................ TGTTAATCCGCTCGTTTCACGGACACTTGAAAGCTT 2159 32 100.0 33 ................................ TCCCAAACCCAGTTGATACCGCTGATAGCTCCA 2094 32 100.0 35 ................................ ATGTATTACTCACGAGGAACACTATCTGACCAAAG 2027 32 100.0 34 ................................ TTAGTTGCATTGGCACGAGTTGGCAGTGATTCTT 1961 32 96.9 37 ...............A................ AATTTCTACGGTGATGGTTATGCCGTCATGAACAAGT 1892 32 100.0 33 ................................ TTGTAAAAGGCATGGTAGATCCAACTTTAAACT 1827 32 96.9 35 ......................T......... CCACCCGCACTAATTGCCAAAGCATTCGCCGTATT 1760 32 100.0 34 ................................ ATCATCTTAGTCTGCTCTTCATTAAACCAAGCAC 1694 32 100.0 34 ................................ TAGCTTTCGGTGCCTGTTGCCTGAACCACGTAAT 1628 32 100.0 36 ................................ GGAATCACCGGCAGATCATCTGGCAAGGCGGCATCA 1560 32 100.0 34 ................................ ACTTTGCACGATCTTTGTTGCCACGGTTTCAGCT 1494 32 100.0 33 ................................ ATCATACAATACAACGGTGTAAAATACAACGGT 1429 32 100.0 35 ................................ AACTAATAGATCCATATACTACCCTCCAATCGCCT 1362 32 100.0 35 ................................ TCCTTTGCCACGGTGTAGCCGTTGACGTAAGCCTC 1295 32 100.0 36 ................................ CAGTGGTAGCGATGTAACGTTAGCCCGGCCAATCAA 1227 32 100.0 33 ................................ ACTTATAAAGTGCCAAACGCACTCTCGTCCGTC 1162 32 100.0 33 ................................ TCATTCGACCCACAAACTGGTTCGTTTTCTGCG 1097 32 100.0 35 ................................ TTGACGTTCTCGGTTAAGTCATCTAATTCTGCTAA 1030 32 100.0 36 ................................ TCATATATAACGCAAGATGAGTATCCAACGGGTGAT 962 32 100.0 36 ................................ AATTCTTGATCGAGATAGTCCAACTGCACCCCGAGA 894 32 100.0 34 ................................ AAGTCACCGAGCGGCAAACGGTTTTCAATCAACG 828 32 100.0 36 ................................ CCAGAGCCGCGCCGTTATCGCGCACTGCTAGGTAGT 760 32 100.0 34 ................................ ACTAGGCTTATTAATGAACTGAATAGCCCAGCCA 694 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 31 32 99.8 35 GTCGCACCTCACGTAGGTGCGTGAATTGAAAT # Left flank : GAAAAATTTAAACCTATCGATTCAAAAACTGTTCCGGTTTTAGTCCAGTGGCCTGAATGTCCTGAAAGTGGTCAACTAGTTGCAGAGGTTGAGGCTAGAAAGGACGACTTCGATCAGATTTCTGCACTAATGAAAAAGGCACAACAATTTGTAGTTCAAGTTTATATGGACGGTAGTCAGAAAACTTTGACTATGGGCAATGTCGTTGCCGACTATATTCCTGAGTTTGGATTGTGGATTGCTCGTGAGGGCTCATATAACGATGAGTTTGGTTTGGATCCAGATGGTGGCTCTAAGTTGGGCTTTGATATGTTATAGGGTAATATATAGTCGGGTGCGAATGTGTAGTTATCATCAAAACGTGGGAGACTCGCACCTTTATTTGGTAATTTAGTGTCCATTTATAATGGATTATGTTCTGATTTGCCTACAGGTATTAGTAAATGCCTTTATTAATTCTGCATGTAGTAGCGTTAGCCGCATTTTTACTATATTTTGCG # Right flank : TGACCACTAGCGATAGTGGATTGAAGTCAATATTTGAGACAGGTTTTAAGAGACATTCAGAACCGCGTTTACCTTCCACAGCTCAAATAAATCATTAATCGTGATTAATAACTTATTTGAACCATGGAAAGCATTAAATCAGGCGGCCATTTGGCTCGTAAGTGTTGCGATTTCAACTTGTAAGGGGGTCTGGTAGCCCAGTGAACTATGAATTCTCTTCCTATTGTAGAAANTGCACATATTCAAAAAGGACAGCAGCGGCAGTTTCATAATTCTCAAAGACCGGCACTGGATAAACACATTCCTTTTTGAGGGAAGCGTGAAAGGATTCCATTGGCGCATTATCATACGGACAACCCTTACAGCTGTATGAGTGGCGGATATGTAGTTCAGTTAAACGTTGATTGTAATCATCGCTGGTGTACTGTGATCCTAAGTCTGTGTGGATAATCAGGTCCCCAGTAATGGTTCGATTTTTAACCGCGCTTTCCAGGGTCTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //