Array 1 501109-504033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHWB01000013.1 Lachnobacterium bovis strain AE2004 CC91DRAFT_scf7180000000100_quiver.13_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================ ================== 501109 30 100.0 34 .............................. TAACAAAGTAATTATGAATGTAATCAAGCATCTC 501173 30 100.0 36 .............................. ATCATAAGAATAATCTTGACAAGTATCACAATCTTC 501239 30 100.0 37 .............................. TTGTGCCTTGATAGTAAAAAGGTGATTGTGGATTTTC 501306 30 100.0 35 .............................. ACTAAAGTTGATTGATGAATTTGTGATCCCCAGCA 501371 30 100.0 35 .............................. TACAATGTATGGCGCTTCTTGTCCTGGCTCTGCGT 501436 30 100.0 35 .............................. ATACATTATGCAAGCGTGAGTGGAGGAAAAGACTC 501501 30 100.0 37 .............................. ATAACAAACAAAAGGAGATAAAACAATGAATATTATT 501568 30 100.0 34 .............................. TATTTTTCAAGCATCAATTTCCTTTTTATCACAA 501632 30 100.0 36 .............................. TTTTTTATAGTATAATATCTTTTGTGTATGAAAAAT 501698 30 100.0 35 .............................. CAAACCAAGAATATCCGGGAACGATTACGGTATAT 501763 30 100.0 34 .............................. TTTTTTTCAAGCCATAGTTTTACGTTTGATTTCC 501827 30 100.0 35 .............................. GCATTAATTCTTCTTTGTTGTCTGCATTCATGCTG 501892 30 100.0 36 .............................. GTTGTCGCACAAACGATATCAGCATCTTCTGGTTCA 501958 30 100.0 36 .............................. TGAGATAATTCAAATTGAAAAGAACCATCAAAAAAG 502024 30 100.0 36 .............................. AAGACTAAAGAGCAAAGACAGAAGTGGGGAAAGTTG 502090 30 100.0 34 .............................. TCGTTTTTTTATAATTTAAGCACTGGCGATTATT 502154 30 100.0 34 .............................. AAGAATCGACACTGTTGTCGCTAGGCTAGACCTC 502218 30 100.0 36 .............................. AAAGAATATCTTGAAGTTGTAAAAAAGCCTAAAACA 502284 30 100.0 34 .............................. CAGACATTTATCGTTAGTCACTATGATGTTGAGA 502348 30 100.0 36 .............................. TATTAAAATATCTGATTCGTTTATATTTTCTTCAGC 502414 30 100.0 36 .............................. GCTGCTAGTTCATGATCTATAATAATTGGTTCATGC 502480 30 100.0 37 .............................. TGGTATGCGTTTTGAATGTCTGTCATGCTAGTTCCAG 502547 30 100.0 36 .............................. AAACATATGACATTATGTTTGGAACGGTTGAAGATT 502613 30 100.0 34 .............................. GTAATTTGTTTTCATTTTTTATATCCTCCTTAAT 502677 30 100.0 36 .............................. CATGCCCATCCATCACTTGTTTGGAATTGCCGATGC 502743 30 100.0 35 .............................. TAGGTTAGATAAAGCATGTATCTATATGTATATTA 502808 30 100.0 35 .............................. AAGCTTCCTGGGAGAGGAGAATTGTGCTTCTACTC 502873 30 100.0 36 .............................. TCAGATACACGAAGCGTATTAGCGTCTGGAATCTCA 502939 30 100.0 37 .............................. TAATAAAAACTATAAGGCAAAGTAGATACAGATGACC 503006 30 100.0 35 .............................. TATACCGACCTCATAAAAGACTAGGCGCAGTCAAA 503071 30 100.0 35 .............................. GTTTTCTGCTCTTTGCTTTTTAGATTTGTTTTTAG 503136 30 100.0 34 .............................. TATTATAAGGTTGAGAGTGTGTCACGAGTTAGCC 503200 30 100.0 35 .............................. ACGTTTACTAAATTTGTTATCCATGCTATTTTTTT 503265 30 100.0 35 .............................. AACATTGTAGCAGACATTCAAGAAATTAGTGAAAC 503330 30 100.0 35 .............................. AAAGAATTTGAAAAGACAAAATATGCTTATGCTTT 503395 30 100.0 34 .............................. TAATAAATGCACTTTTAGGAAAAGAGCAAACTAA 503459 30 100.0 34 .............................. ACTTATCATTCAAAATGCAGACTTGCAATAAGAA 503523 30 100.0 34 .............................. AGCTATTAAAGTCTTTCAATGGTCCTTCGTCTGG 503587 30 100.0 35 .............................. TCATATCTGCTAGAATATCTTCCACGAGAATCTCT 503652 30 100.0 35 .............................. AAGGAAAACAAGGAAAGTAAAAACGTTGTAAATAA 503717 30 100.0 37 .............................. GAGCTTTTAGCGCCATTGCAGGCCCACGCGGCCCACA 503784 30 100.0 18 .............................. TTAAGCTAGTCATTTTAG Deletion [503832] 503832 30 80.0 80 .C.G.......G........A.GA...... TGTTTTGAAAATCTTGATTAATTTTTAACTTTAAAAGATAAGTTGAAATTAGAATTTTTATGTGTTACTATGATATGAGG 503942 30 90.0 31 T.T..............A............ ATTATTTACTCTTTACAGAAAATGTATTAAA 504003 30 86.7 0 .A.....................A...CT. | T [504006] ========== ====== ====== ====== ============================== ================================================================================ ================== 45 30 99.0 36 GTATTAATTGAACCAAAGTGGAATGTAAAG # Left flank : AGCATATTTTTGGAGAAAAAGAATATAAAGGATTTGAAATGTGGTGGTAAAAAATGTATGTAGTTTTGATATATGACATACCATTAGAAGATGGTGGGGCTCGCATACAGCGTAATGTTTTTAAAATATGTAAAAAATATTTGTTTCATATTCAATTGTCAGTTTTTGAGGGGGATATTTCAAAAGTTCAACTGAAACAGTTAAAAAACGAATTGGATAAATATATACGAAAAGAAAAAGATTCAATAATTGTTTTTAAAAGTAGAGAAAAGAGATGGCTTGAAAAAGAATTTTATGGGAAGGTTGATGATATTACAGATAATTTTCTTTGAATTGTCGATGTGCGATATCATAAAAAAGTCTATAGATAGACAATACTGTAAATTAGCAAAATAACCTTATAGAAGTAATAATTTCTTGAATAAAGTTGATGACGACAACGAGCATAGACAAAAGATATAATTGAAAAGTTTGAAAATACTATGCTATAATTGTTACGG # Right flank : GTAAACAAAGTTTTTATTATAATGTAGTAAAAATATTCCCAACAACAATATAAAATAAAAAAGTTGAGGAACGAAGATTCATATTTACAACAAATATTTCTTCGAACTTCAACTTTTTTATTAGTTAACAGCTAATTAATTAACCGATAAGTTTTGAAACTACCTGTTGGATATCTTTACCATCAGCTTTACCTTTTAATGCAGGCATAACGTTTTTCATGATTTGACCTTTGTTTTTTGTTGCAAGGATTTCTGCAAAGTTTTCATTTAAGAAAGCTTCGATTTCTTCTTGGCTTAACATTTTTGGTGCAAATTCTTCGATTACAGATACAATAAAGCTGTATTCTTCTTTTAAATCTTCACGTTCAGCAGGGCAACCTTCTAACTGCTCTTTTGCTATACGTAATTCTTTACTGATAGCGCGATTTACTTGCTCATCACTAATTTCATCTCTAGTTCCTTCATCAATAGCAATTTTCTTTGAAGCAGAAATTAAAGAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGAACCAAAGTGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //