Array 1 2337280-2332629 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027611.1 Acinetobacter baumannii strain AR_0101 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2337279 29 89.7 31 ....G.......CC............... AACGAGCATGGTTTAGATTTAAGAGATGGTA 2337219 29 89.7 31 ....G.......CC............... TTTGAACTTGTGCATTCTCAATGATTGTTTT 2337159 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 2337099 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 2337039 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 2336979 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 2336919 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 2336859 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 2336799 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 2336739 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 2336679 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 2336619 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 2336559 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 2336499 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 2336439 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 2336379 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 2336319 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 2336259 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 2336199 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 2336137 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 2336077 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 2336017 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 2335957 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 2335897 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 2335837 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 2335777 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 2335717 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 2335657 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 2335597 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 2335537 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 2335477 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 2335417 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 2335357 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 2335297 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 2335237 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 2335177 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 2335117 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 2335057 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 2334997 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 2334937 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 2334877 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 2334817 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 2334757 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 2334697 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 2334637 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 2334577 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 2334517 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 2334457 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 2334397 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 2334337 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 2334277 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 2334217 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 2334157 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 2334097 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 2334037 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 2333977 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 2333917 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 2333857 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 2333797 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 2333737 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 2333677 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 2333617 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 2333557 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 2333497 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 2333437 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 2333377 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 2333317 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 2333257 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 2333197 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 2333137 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 2333077 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 2333017 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 2332957 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 2332897 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 2332837 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 2332777 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 2332717 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 2332657 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 78 29 93.1 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2342370-2344552 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027611.1 Acinetobacter baumannii strain AR_0101 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2342370 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 2342430 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 2342490 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 2342550 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 2342610 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 2342670 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 2342730 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 2342790 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 2342850 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 2342910 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 2342970 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 2343030 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 2343090 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 2343150 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 2343210 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 2343270 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 2343330 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 2343390 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 2343450 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 2343510 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 2343570 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 2343630 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 2343690 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 2343750 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 2343810 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 2343870 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 2343930 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 2343990 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 2344050 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 2344110 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 2344170 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 2344230 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 2344290 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 2344350 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 2344405 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 2344465 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 2344526 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //