Array 1 13567-7208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPR01000156.1 Methanosarcina mazei strain 3.H.A.2.6 scaffold8_1_size56261-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13566 37 100.0 34 ..................................... GGATGCCCTGCAAATATCCGGTGACCGGGATTCC 13495 37 100.0 36 ..................................... CGTCTTTCATTCAGGAGTTCCGTTAGATTCGTGTTT 13422 37 100.0 36 ..................................... CACAGTTGCAAAGTAATGCAACTTGTGCGGGAATTG 13349 37 100.0 37 ..................................... ATTGACAGAGCAACCGATTCAATCAATGGAGAGCCGT 13275 37 100.0 35 ..................................... ATCGGCTCTGGATACTCAGACCAGCAGAAAAACTG 13203 37 100.0 34 ..................................... AGAAGAATGAAATCCACAAGTTCGACCCTAAAAA 13132 37 100.0 36 ..................................... ACAGCAATGCACGCCGCAAAACAGAAATTAATTTAA 13059 37 100.0 35 ..................................... TTCCCTTGTATAGCTCACGCGGGAACCGTAGAAAC 12987 37 100.0 37 ..................................... TAAACACCGTAAATAATTTGCTCCGGTGCGTATACTT 12913 37 100.0 36 ..................................... TTGATCCTTGCCCCTGCTGTGCTCCCTTTCATGCTT 12840 37 100.0 36 ..................................... TTATTCCCTTCTTATTTAGAATGTTAAAGAGTCATG 12767 37 100.0 37 ..................................... ATATATAGACTCGATTTTGTCGGGTATTCGTTTGCAA 12693 37 100.0 35 ..................................... AGTCGCATTTAGTAACTTCTCGGTTTTTTTCACAT 12621 37 100.0 39 ..................................... TTACATTATACTCTATTTGTGTTATTATATCTATATTAT 12545 37 100.0 35 ..................................... TAAACACTCTGCAACAACTGAGTATGCTAATCCAA 12473 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 12401 37 100.0 36 ..................................... CGGCGACTCCGGTAAATTCATACAAAGTTGTAGAAG 12328 37 100.0 36 ..................................... CTATTTTTAGAAGGGATCTATGATATCAATACCCGG 12255 37 100.0 37 ..................................... AGTTCGTGTCAGGGAATAGTTTGTGATAATCTGATGT 12181 37 100.0 34 ..................................... TGATAACGCCTTTTGCTGCATCCCTTGAAGTGTT 12110 37 100.0 35 ..................................... TTTCAATTACCACATTAGCTTCTAACTGTTCAATT 12038 37 100.0 35 ..................................... ATGCCCAGCCCTCGACACCCGGACATTTATCTTGA 11966 37 100.0 35 ..................................... AACCATTCGATATCCCTATGATACGTCTCTGAATA 11894 37 100.0 35 ..................................... TGTAATTCTGTCGCGGCGGGGCTGTTGAGTGCTGA 11822 37 100.0 34 ..................................... AGGGTTTCAGAGGTCATTTTCACACCTCTACAAA 11751 37 100.0 35 ..................................... TAATGAATGCTCGTAAGGTTCTCAGGAGCAACATA 11679 37 100.0 35 ..................................... TAATAACACAATTCGGAGCAGTGGTATAGGCGGCA 11607 37 100.0 37 ..................................... TTAACTGCTTTTGAATCAATCGCGGAATCGCTTAAGA 11533 37 100.0 34 ..................................... AAAAATTTAGTTTTGACAGCAAGCCGGGATTCTG 11462 37 100.0 35 ..................................... ACTGTTGAATTAATTTCGATGTCGTTTTCTGAAAA 11390 37 100.0 35 ..................................... AAAAGAGTCTGACACCATAGATTTCCATAAAACGG 11318 37 100.0 36 ..................................... AAAGTTAGGAAGGCAGGGTATCAAGAACTGGTCTAA 11245 37 100.0 35 ..................................... CTCACTGTTCCCACGCTCCTGTTTTGGCGTTATAT 11173 37 100.0 34 ..................................... CTACATCTGTGCCAGCCTCCCCGATTGTGATTGT 11102 37 100.0 38 ..................................... ACTGTACTGTCCTCCCTCCCTTGCCTCTTTTTGTAGGA 11027 37 100.0 36 ..................................... GTAAGTATCATGCTTTCAGGGAACAATTCTACCGCT 10954 37 100.0 35 ..................................... TAAATCAAAAAATCAGAAAACGAGGACAGTATGAA 10882 37 100.0 36 ..................................... TTTGTCATTTTTTGTGACTTCCTTAAACTCAAACTT 10809 37 100.0 37 ..................................... ACAAGGGACTCCCATTCGTCTGAACCCCCATACGTAT 10735 37 100.0 35 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAA 10663 37 100.0 35 ..................................... GAAGACTCCGAGCAAGTGCCCCAGATGAAGGACGT 10591 37 100.0 35 ..................................... GGATACCCGTATCTGTTTCATATCCAGGCTCTCCG 10519 37 100.0 35 ..................................... TGCTTTGGTCCCGTACATAGCTATCTTGGCTATTG 10447 37 100.0 35 ..................................... CTTCTAGTATTTTCACCTTGTTTCTCAGCGCATTT 10375 37 100.0 34 ..................................... AAAAACGGGCAGAATAATAATACACTAGCGTATC 10304 37 100.0 37 ..................................... TGCGAGTGGGAACCAGGTGCGGAGAAGTCACCGGATA 10230 37 100.0 36 ..................................... TAAAAAATTAAGAACGTTGTCATTTTTGCGTTGTCT 10157 37 100.0 37 ..................................... GAGGCTGGAGAGCTCGGATATGTCAGCGATACCAATA 10083 37 100.0 36 ..................................... CTATCATGCTGACACACCCAATGCCCCACAAACCGC 10010 37 100.0 37 ..................................... TTTTTGATTTTTCTTCCGGCATGAAATCCTTGATCTC 9936 37 100.0 37 ..................................... CTTGTGGGGTTCCAATAATCAAAACCTGCCCGGAGAT 9862 37 100.0 37 ..................................... AGAGTCTCCCAATAAGGTCGTCTTTGTGCCAACGAGT 9788 37 100.0 36 ..................................... AAAAGTCAGTCACGGCCAGCCTATGCGCTAAGACTT 9715 37 100.0 36 ..................................... TTAGGGTATTACAGAGCGTCTATTATATTCTCACTT 9642 37 100.0 35 ..................................... GCTTCAAGGTTATTGCCCGAGTTCGAAGGGTGTAA 9570 37 100.0 35 ..................................... CTGATTTCTTGCGGGACTTTGGGAAGCCGGAAAAA 9498 37 100.0 35 ..................................... TCTCAAACAGACCTATACACCTTCAACCGATCCAA 9426 37 100.0 34 ..................................... TTAACGACCCAAAAAACAAAGCAGGACCAAAAAG 9355 37 100.0 35 ..................................... ACCACCTTAAACAAAAACTATATATAATATGTGTT 9283 37 100.0 34 ..................................... CATTCACCGTAAAAAGATTGCCTGTGCCGGTATC 9212 37 100.0 38 ..................................... AGTATTCATGACGGGCTGCTGAAATCTGATTACACTCT 9137 37 100.0 37 ..................................... ATACTCAAAAATCCAAACATAAAAAGCTCAAGAAAAC 9063 37 100.0 35 ..................................... CAGTTTTGAGTTCAGCTTTTGCAGAATCGAGTTCA 8991 37 100.0 35 ..................................... CTGTCATATTCGATGTCGTGGATAGTCGCTTTCAC 8919 37 100.0 34 ..................................... ACAAATTACCATCTGCTACAATAACTAAACCCAA 8848 37 100.0 35 ..................................... TTGTAGCCTCTAAAGCAGTACCGAGAGGTGCGAAT 8776 37 100.0 34 ..................................... ATATTTGGAATTATAGAAGCAATAACCCTAATAG 8705 37 100.0 41 ..................................... AAAAACAAATGATTAATAAGCTTAATGAGATAGACAGATTA 8627 37 100.0 36 ..................................... TTTAGTGCTATTCTGCCTTCCGTTTGTGTTCATTTG 8554 37 100.0 37 ..................................... CCTTATAGTCTGCAATATCTCTAAATGTTAAAGTCTT 8480 37 100.0 35 ..................................... TCAAACAACATTTCAAAAAAAGAATTTCTCACTAT 8408 37 100.0 34 ..................................... TCCATCCTGTTCTCGAACTGTTCCTCATAGAACG 8337 37 100.0 36 ..................................... TAATATGGCAACATTAACACTAACACCAGGCACTTT 8264 37 100.0 38 ..................................... GGATCTCGGTTGTTTGATTCCCATCTATCACGTAATAA 8189 37 100.0 35 ..................................... TAAAAAGTATTATTTCTTATGATAACGCCTTTTGC 8117 37 100.0 35 ..................................... ATTCCTTATTTTCCTCTTAATTTCTCCTCTCACTT 8045 37 100.0 34 ..................................... ACATATTTTAAAGGGAAAAAAGAAGATAAGTAAA 7974 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 7900 37 100.0 37 ..................................... GAAGTCGTCTTTTCACATCGTAAAGTATTGCTAGTTC 7826 37 100.0 36 ..................................... GTCCCAGACAGGAATAATAAACCCACTCTCGCACAA 7753 37 100.0 34 ..................................... CTCTCGAAGAACCTTTTTTTTGTTTTCCCATCGG 7682 37 100.0 38 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCCAA 7607 37 100.0 35 ..................................... TTCCCCGCTCTATCTCATCTAGAGCTACCTGGACG 7535 37 100.0 37 ..................................... TACATGGTATTAATATGGAACCAAAAATCCCCCCACT 7461 37 100.0 35 ..................................... TCAGGAAGAGGGTTTTACTCATGCTCCTGTGATTT 7389 37 100.0 34 ..................................... GAATTCAGAAGAGGATACATTGCCATCATGGCAA 7318 37 100.0 37 ..................................... TTTCATTTTTTGTGACACTTATTGTTATATTGTCATA 7244 36 75.7 0 .....T.....T..........G.GCCT-.......A | C [7212] ========== ====== ====== ====== ===================================== ========================================= ================== 88 37 99.7 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : GTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 16276-22894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPR01000014.1 Methanosarcina mazei strain 3.H.A.2.6 scaffold28_1_size36374-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16276 37 97.3 37 ..................C.................. CCGTTGCAACCCGTGGGCATGATGAAATTATAAAAAC 16350 37 97.3 35 ..................C.................. TGTGAGTTTGAATCGCTTGATTCTTTCAGAAAGGT 16422 37 97.3 34 ..................C.................. ATATTTTCAGAACGTTGAAACCAAAACGCATTAT 16493 37 97.3 35 ..................C.................. TAAAAAATAAATCAATAAGAGAATAACGTTTTTCA 16565 37 97.3 35 ..................C.................. ATTGATAGGGGAGAGATGCGGTATAAGCTCCCGGT 16637 37 97.3 35 ..................C.................. CAAAGAACCCCGCAACAGGCGAAAAGAAGAAAAGC 16709 37 97.3 35 ..................C.................. TTTTTAACCTGCTCTTCCCAATTACCGGCTAAGAA 16781 37 97.3 36 ..................C.................. ACCGCATTGTCACCGGATCCCTTTTGCCCTGCATTA 16854 37 97.3 32 ..................C.................. TGGGAGCTTAGAGGGAGTGCACGTATAGAGAG 16923 37 97.3 34 ..................C.................. CTGATAGGGTCAACCTTTAGCACTCCGATGAGAT 16994 37 97.3 33 ..................C.................. TGTTCAATGATCTCTACTTTTGCCGGGAAAGAT 17064 37 97.3 35 ..................C.................. CGGAATTCTCGCTAAATTGAAATCAGGCGAAATAG 17136 37 97.3 35 ..................C.................. TATGTTTCAAAGAGAGCTTTAACAGCGTCACTGTT 17208 37 97.3 36 ..................C.................. GTTATTTTTATATCAAGTTCGTTCATCGTGTTTTCA 17281 37 97.3 35 ..................C.................. CAGTGTGGCCGTTGAATGTGATTGTTTCATTGTCG 17353 37 97.3 33 ..................C.................. GCAGACCCAAAACGTATTGAATTCGTCTTCTGT 17423 37 97.3 35 ..................C.................. CCACCTTGTAGGTAATAATCTTTCTAATTACTACT 17495 37 97.3 35 ..................C.................. TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 17567 37 94.6 34 .....A............C.................. TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 17638 37 94.6 36 .....A............C.................. AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 17711 37 94.6 35 .....A............C.................. TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 17783 37 94.6 35 .....A............C.................. AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 17855 37 94.6 35 .....A............C.................. TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 17927 37 94.6 34 .....A............C.................. TTTATAATGTACCAGATCCATTCTGGCTGAATTA 17998 37 94.6 37 .....A............C.................. TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 18072 37 94.6 35 .....A............C.................. CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 18144 37 94.6 38 .....A............C.................. TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 18219 37 94.6 37 .....A............C.................. TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 18293 37 94.6 33 .....A............C.................. AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 18363 37 94.6 35 .....A............C.................. AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 18435 37 94.6 35 .....A............C.................. AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 18507 37 94.6 35 .....A............C.................. TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 18579 37 94.6 34 .....A............C.................. TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 18650 37 94.6 36 .....A............C.................. ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 18723 37 94.6 36 .....A............C.................. CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 18796 37 94.6 35 .....A............C.................. CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 18868 37 94.6 35 .....A............C.................. CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 18940 37 94.6 34 .....A............C.................. AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 19011 37 94.6 35 .....A............C.................. TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 19083 37 94.6 32 .....A............C.................. TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 19152 37 94.6 34 .....A............C.................. TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 19223 37 94.6 35 .....A............C.................. CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 19295 37 94.6 35 .....A............C.................. TCCAGTGGTCAGGTGTTTCGCCGTGTATTTTCTCA 19367 37 100.0 36 ..................................... TAAGAATAACACCTACAGGTAAAATAGTACTTGAAG 19440 37 100.0 36 ..................................... CTGCTGATCTGTCCGGCAATCCGGTAAACATCTTTT 19513 37 100.0 35 ..................................... AGCCTCTGTTTGTTGTACTGAGTAGGAATGCATAT 19585 37 100.0 35 ..................................... TATACTCCCCTGCTCTTTGCTTTCCTCTTCTTTTT 19657 37 100.0 36 ..................................... TTTTTGTATAAATCAGTTTAATAATAATGTTCTTCA 19730 37 100.0 35 ..................................... TAAACTGTCTGGTTAACAATGTCTATATAAGAATT 19802 37 100.0 34 ..................................... TGAAATCATTCTCCCTGAAAATGTCACCGAAATT 19873 37 100.0 37 ..................................... TTCTGTTATCCTGGCTATCTGGTTGAAAAGATTACTT 19947 37 100.0 37 ..................................... CAGGCGGCATACTGGAGGCAGTTGACAGCAAGGATTC 20021 37 100.0 35 ..................................... CAATTATCTTCTTTCCTATTCTCCTTACGTCAACT 20093 37 100.0 34 ..................................... ATATTTTCCTCAATGACTATTGCCAGCGCGGGGA 20164 37 100.0 34 ..................................... TGAGTCTGTCTGCTGCACTCTCGTATTCTGTCCT 20235 37 100.0 37 ..................................... TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAATAAT 20309 37 100.0 36 ..................................... ATCAGTGCGATAACATTGCAAAGTTCATCCTTTTCC 20382 37 100.0 36 ..................................... AAAGTCAAATATTCCACTTTTTCAGGATCGGTGTAC 20455 37 100.0 36 ..................................... TTATTTCCAGAATTGAACAGTTAGAAGCTAATGTGG 20528 37 100.0 35 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATTC 20600 37 100.0 34 ..................................... TAAGAGACAAGTTTGGACTTTTAGACGGGGATAG 20671 37 100.0 35 ..................................... CGGGAGCTAAGACGGCAACATGGACGACTCTTTTT 20743 37 100.0 35 ..................................... TAGCTCCGGGTGATGTTTTTGAAGTTAAAATAGGT 20815 37 100.0 35 ..................................... TTTTCAATCGCACACGCAAGACCCTGACTGAACTT 20887 37 100.0 36 ..................................... AATGTTACTATCTGTAAGTAATAGTCGTTGCTCCGT 20960 37 100.0 33 ..................................... TATTAAACGCTCAAGAAACAAGTAATGATATTT 21030 37 100.0 35 ..................................... TTTTAGGTTATTATCACGCTGCTTTAACATTCTCA 21102 37 100.0 36 ..................................... TTGCGATTTGGGATGTAGCTGACGACAGGGTTGATT 21175 37 100.0 35 ..................................... GTTGCCCTCTTGACTCAGAAGGAAGCAAAAGAACA 21247 37 100.0 37 ..................................... TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 21321 37 100.0 36 ..................................... TTAAAAAATTTCTTCTCCTTTGCAGCGTACCATTTC 21394 37 100.0 37 ..................................... ACCTGTTTCATTTATAAGCCTCTCTGTCTTTTAATTT 21468 37 100.0 37 ..................................... TGAAGGAAAACATCCGTGAGCCTGTACGGATACCCTT 21542 37 100.0 35 ..................................... CCCATTCGTGGCCCACCCCTCCAGGGTTTGAAGCT 21614 37 100.0 38 ..................................... TAAAAAAACTTGATGAGATTATTAACCCCAGCCCAGCA 21689 37 100.0 35 ..................................... TTGTCCTTGGTTTGGATTGTGAAGCCTTGAAGTAA 21761 37 100.0 34 ..................................... ATGAAAATCTAAACGATGAATCTAATACACTTCC 21832 37 100.0 35 ..................................... AAAGAAAGTATGACGGCACAGCAGGTATAATTAAC 21904 37 100.0 38 ..................................... GTTATCTCCTTTTAATTAGCGTTGTTATCATTCGTTTT 21979 37 100.0 37 ..................................... TTTTATATATTAATGGAATAAATGAGTCGAGTGGTAC 22053 37 100.0 34 ..................................... TCGTTATCGATTATACTGACCGTGATAATTTACG 22124 37 100.0 37 ..................................... TCCCTGCATTTCTGATCGTATTTTGTAAAAGAATAGA 22198 37 100.0 38 ..................................... GTACACTTAGCATGTCCTCTAAACTCGCTTTTTCCGTT 22273 37 97.3 39 ..................C.................. CACGGTAACGTTTTTTTATGTCAAAAAAATAATCCGGAT 22349 37 97.3 34 ..................C.................. CTTGGTTACTTTGTGGACCTGGGCGAATCCACAG 22420 37 97.3 38 ..................C.................. AATCTGCTATATTATCCAGTATTACTCCATTAATTACT 22495 37 97.3 34 ..................C.................. TAACTCTGAGCATAAGAAAGAATTTCGTGATCTG 22566 37 97.3 36 ..................C.................. TTACAACGTCTGCAAGCTCTTCTTTCATGTGTTCGT 22639 37 94.6 35 .....C............C.................. TTCTATGAACGAGATTCCTGTTACTCTTTTTGAGA 22711 37 97.3 35 ..................C.................. TTTCGAAGAGCGTTTCTTACTTCTTCTGCTTCTTC 22783 37 75.7 37 TG...A...GT..T....C.......G.........T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC C [22794] 22858 37 83.8 0 .....AT.A..................A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 92 37 97.3 35 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAATTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTACAATCAATGAATATTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //