Array 1 63601-60975 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZDK01000010.1 Moraxella catarrhalis strain CCUG 58286 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 63600 28 100.0 33 ............................ AAAATTGCTCATTGTCTGATATTCGTTATCTTC 63539 28 100.0 32 ............................ TCGACCGAAAGGGGTCGGTACTCTTTCTTCGT 63479 28 100.0 32 ............................ ACACTTTCAACCCACGCACTCCATGTATCGCC 63419 28 100.0 32 ............................ ATTCGTCGATAAATTCTTTAACACCTTGCATG 63359 28 100.0 32 ............................ GAAAGAAAAAGTTTATCGCCTTTATGATGGCA 63299 28 100.0 32 ............................ TATTAGAAAAAATTTTTCAAAAATCATAGCAT 63239 28 100.0 32 ............................ TATAAAGAACATATCTTATCAATTCCCCGTGA 63179 28 100.0 31 ............................ TGTATTTATATATTAGATGATAATTCAAGGA 63120 28 100.0 31 ............................ TTGACCCCCGCCCACTAGCCCCAGTTGTGAG 63061 28 100.0 32 ............................ GCCGACAATACTACCTTGATAATCATTAGCCA 63001 28 100.0 32 ............................ TATCGCTAAGGCAGGGTTTAAATACCATTCAA 62941 28 100.0 32 ............................ TAAATTTCACTTACTACAAAAACAAAAAGGGA 62881 28 100.0 32 ............................ ACCCCAAGATGTAGATTTACCCCTTGCCACCG 62821 28 100.0 32 ............................ AGTATAGTGATTTTCGCCATTGACACACTGGA 62761 28 100.0 32 ............................ GCTGATGACAATCACCAATTTACCATCACCGC 62701 28 100.0 33 ............................ AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 62640 28 96.4 31 .............T.............. CTTACAATTTTTTTGTCAAAATGCTGCATAA 62581 28 92.9 32 .............T....T......... ATTCATTGCCAAACCTTTGATTGGTACAGTCG 62521 28 100.0 32 ............................ CAGTCGAATTCACCATGCCAAACGCCATTTTC 62461 28 100.0 32 ............................ ACGGGCGAAATTCCACCCCAAATTCATGCCAA 62401 28 100.0 32 ............................ AATCAAAAATTTTTGACGACTTATTTTTTTTG 62341 28 100.0 32 ............................ AGCGTATCAACACCTTGCAAAGCGACTATAAC 62281 28 100.0 33 ............................ ATTGTGGGTTAATGTCAGATTTTCCCTTGAGTT 62220 28 100.0 32 ............................ GTATTTAATTTCTACAACTGCGCCTGATAATT 62160 28 100.0 32 ............................ CTAAATTCATGCCAAATAATACCCCCTGTACG 62100 28 100.0 32 ............................ AATCTTGAACGAACGCTAACAACAAACAATCA 62040 28 100.0 32 ............................ GCTCAACACTTGTCGCCTGTCTGCTTTGGGTT 61980 28 100.0 32 ............................ ACAGTTCATTATTACCACCTGTGCCGACATTC 61920 28 100.0 33 ............................ TCCTTCAAAAATAGCGAAAATAAGCGTTTTAGC 61859 28 100.0 32 ............................ AGCTAAAGGCGGCGCAAAAAAGTCAAACACCG 61799 28 100.0 32 ............................ ATAGCAGTATATCCGAATCAATAACAGTATAT 61739 28 100.0 33 ............................ AGTAAATCAAGAAAAGTAGTCGAGAAAATACTT 61678 28 100.0 32 ............................ AACAAATATCATTACCCCAAGCCGTGAAAAAC 61618 28 100.0 32 ............................ CCACACTTCCCACCCTGATTATAAAAAAGCCC 61558 28 100.0 32 ............................ ATGACAGAGAACGGTTAAGTACAACGGCAATC 61498 28 100.0 32 ............................ TTGATACACAAAACATGTCTATTGTACTTTCT 61438 28 100.0 32 ............................ TTGTATCTGTGTCAGATTTGAGTGCGTGGCTA 61378 28 100.0 32 ............................ TTTCGCAATAAGTTTGGCGAATATATCTCACT 61318 28 100.0 32 ............................ AAATCAAGCCGGTGGTGTTGATTTAGTGAGCA 61258 28 100.0 32 ............................ AGCGATTGAAAGTAATATTAATAGCTTTAATA 61198 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 61122 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 61062 28 100.0 32 ............................ TTGATACACAAAACATGTCTATTGTACTTTCT 61002 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================ ================== 44 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TCGCATTGCGGCTTGGGTGATAGATGTCCCTGTGCCAAGCAAGATGACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTCGTATTTGGTTTCGGTGAGATACAGGATGCGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATACATTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATTCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATATTACCCATCTGCCATATCAGTTATGCTATACTAAATTTGCCATCAGATGATGATGGGTGTAAAAAACCTTTATTTTTTCAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACT # Right flank : TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCATCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGAAGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //