Array 1 47221-46765 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLSI01000016.1 Escherichia coli strain MOD1-EC5105 MOD1-EC5105_16_length_117706_cov_52.5851, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47220 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 47159 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 47098 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 47037 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 46976 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 46915 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 46854 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 46793 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74837-72917 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLSI01000016.1 Escherichia coli strain MOD1-EC5105 MOD1-EC5105_16_length_117706_cov_52.5851, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74836 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 74775 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 74714 29 100.0 32 ............................. GCTTGCGAATGTGTGCCGTAGAACGTGCGTCG 74653 29 100.0 32 ............................. ATTTCGCGCTCTCTGTATCGAATGTCACGAAA 74592 29 96.6 32 ..........A.................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 74531 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 74470 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 74409 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 74348 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 74287 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 74226 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 74165 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 74104 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 74043 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 73982 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 73921 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 73860 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 73799 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 73738 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 73677 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 73616 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 73555 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 73494 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 73433 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 73372 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 73311 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 73250 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 73189 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 73128 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 73067 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 73006 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 72945 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //