Array 1 1579-111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIHW010000008.1 Yersinia rohdei isolate IP38305, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1578 28 100.0 32 ............................ CATAAGCCACCAATCCACTTAACGCCTTTCGG 1518 28 100.0 32 ............................ TTCACGCCATACTCCGCGCTGAACACGCTTAT 1458 28 100.0 32 ............................ TTAATTGGTGCCTTTTTCTGGTTCACTGACGA 1398 28 100.0 32 ............................ CTACAGTGACAAATGCCCGTCGTACTCTCGCC 1338 28 100.0 32 ............................ AATAGAGCACTTGAAAATTACAGTAAACCAGA 1278 28 100.0 32 ............................ AATAGAGCACTTGAAAATTACAGTAAACCAGA 1218 28 100.0 32 ............................ AATAGAGCACTTGAAAATTACAGTAAACCAGA 1158 28 100.0 32 ............................ AATAGAGCACTTGAAAATTACAGTAAACCAGA 1098 28 100.0 32 ............................ CGGAAGAATCCAAAGCAGTATTGACAGGTGGT 1038 28 100.0 32 ............................ TGATAGACGCCTATACGGTTTAATAGTTACTG 978 28 100.0 32 ............................ TTACAGTACACTATATACCCCCATCAATCATG 918 28 100.0 32 ............................ AGAAAGTCATAATAAATTGGGTCTTGTGGGCA 858 28 100.0 32 ............................ CTGTCACTATTGCCAGATCCATGCTATCGACA 798 28 100.0 32 ............................ TTTAGTACCTATTTCATTCGGAGCGGTACAAA 738 28 100.0 32 ............................ CGATAGAGCCGAGCAAGGCGTTATAGATCACG 678 28 100.0 32 ............................ TTGTTTTTGCTGGGTTAAGCGCCAGACCATCA 618 28 100.0 32 ............................ TGAACATAGTCCGGCATCTTTTCATAAAACAC 558 28 100.0 32 ............................ ATGTAGACCGACGCACCGGTTGCGAACCCTTA 498 28 100.0 32 ............................ ATATACCCCGATATAGATAGAGTGTGAAACAA 438 28 100.0 32 ............................ GGTATCATCCGGCTAATTCCGTGGGTGTATAA 378 28 100.0 32 ............................ TGTGACATTAGCCGCGTAACCCCGTCCATGTA 318 28 100.0 32 ............................ TAGCTAACACGAACAACATAGGCTTACATTAC 258 28 100.0 32 ............................ TGACAGCGCGAAGTTCAATCAGGTCGCAACCG 198 28 100.0 32 ............................ AATACCCTTCTGGAGCGGCCTTATCAGTGAAT 138 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 32 GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Left flank : GCGCAAGATATCGATAATTTGATGCAGCAAAACTGGTTACAAGGTATGCGTGACTACGTTCGATGCAGTGCGGTATTGCCGGTGCCTGAGGCAGTACAATACCGAACGGTGAGGCGAGTACAGGCAAAAAGCGCCCATAACAAGCGGCAGAGATCGATTGCTAAAGGGTGGCTAACTGAACAGCAGGCGTTTGAACAAATACCCGACACCCAACAGAAATCTCTCAGGTTGCCTTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGAGAATTTATATTCAGCATGGCGAATTGCAGGAACAAGCTCAGTTGGGAAGTTTCTCTGCCTATGGTCTAAGTAGCAGTACCACCATACCCTGGTTTTAACCCTTTTTTTCGGCTATTGCTAACTGATTGTTTTGTAATGGTGTAATGAGAGGGTGAGAAAAAAGGGTTTATCAGTCAATATCCTGATTTATGTTTAATAAACAGGGTGATGGCATATTTTTATTACC # Right flank : ATGAAATGTGTATCGAACGTAAAGAGGTGGCAGGTTTGTGAAAGTCTGGACCTCGGTGGACAGTTAGTGTTTTCTAACTATAGCCGGAGGTCTGGATATGATGAATGCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //