Array 1 461151-462336 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBOU01000023.1 Salmonella enterica subsp. enterica serovar Newport strain SN0033_1 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461151 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 461212 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 461273 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 461334 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 461395 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 461456 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 461517 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 461578 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 461639 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 461700 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 461761 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 461822 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 461883 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 461944 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 462005 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 462066 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 462127 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 462188 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 462249 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 462309 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479006-480621 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBOU01000023.1 Salmonella enterica subsp. enterica serovar Newport strain SN0033_1 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479006 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 479067 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 479128 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 479189 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 479250 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 479311 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 479372 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 479433 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 479494 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 479555 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 479616 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 479677 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 479738 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 479799 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 479860 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 479921 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 479982 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 480043 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 480104 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 480165 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 480226 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 480287 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 480348 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 480409 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 480470 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 480531 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 480592 29 100.0 0 ............................. | A [480619] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //