Array 1 342925-342714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWP010000001.1 Streptomyces physcomitrii strain LD120 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 342924 29 100.0 32 ............................. GGCCGGTGCGCTGTCTGCCCAACCCCGAAAGC 342863 29 100.0 32 ............................. CGCCCCCACCTCGGCGCCCTGGCGCTCGCCCT 342802 29 96.6 32 .........................C... GGACGCATCGCCGTGTACGACAAGGACGGCGA 342741 28 72.4 0 ...........A..A..A..AA.T-C... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CTCCACACCGCGGGCCTGCTCCCCCGCCGCCCCCGCCTGATCGCCGTCCAGTCCGCGGCGGTGGCCCCCCTCGCCCGCGCCTGGCAGGAGGGCGCCGACGACCTCCTCGACGACACCCCCGCGTCCCCCACCCTCGCCGAGGGCATCGCCATCCCGCGTCCACCGCGGGCCCGCCAGATCCTCCGCGCGGTACGGGAGTCCGGCGGCGAATTCCGCACGGTGACCGAACCCCAGATCCGCACCGCCCAACGCGACCTCGCGGCCCGCGGCTTCTACGTGGAGACGACCGGCGTCGCCTGCTGGGCCGCGGTACGGGAGGAGGCCCGGGGACCGAGCACGGTGGTGCCGTTGTGCGGGGCGGGGGTGAAGACGGGGGTGGGGGTGTAGGAGCTCGGACCCGCGATGCGCTGACTGACGGGCGGCTTCAGCGAGTTGTGCCGGATTCAAAGCTAGTTACCGAGATCAGGGGCGCGGCGTAGTAAAGCCCCAGTTCAGTTCGT # Right flank : TCCCATACGTCACAATCAACCCACCCCCTCCGCTCCCTACGGAAAGACCCCCTATGGACACCGGAAAGCTCGAACTCGCCGCCCAGCGCTACCGCGAGGCCAAGGCCGCCCTGGACGGTGCCTTTGCCGATCTGCAGGTCGAGGCGATTGCCGCGTTGCAGAAGGGGAGCGACGAGACCGGCGACCACGCCGAGGTCGCCCGGATCACCGGGTGGTCCGAGGAGCAGGTGCAGCAGCTGATGCGTCGCGCCGCCGAGGAGGGCGTCGAGGCGAGCTGAGGCATCCCGGAGGGGACCTGTACGCAGCCTGCCCGGGTACAGCCCCGAACGTGCCCGCCCCCGGGTGTCAGGTGGTGGCGGGCCGCTCGTCCTCGGGCTCACCGGGCAAGGCTGACTCCACCGGCGCGGACTCGGTCGAGGCGGCAGCCGCCTCCGAAGACCCCTCCGGCGCAGAAGCCTCCCTCCGCCCCAACTCCCCCGCCAGCCGCCGCTGTTCGTCCT # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66769-67648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWP010000013.1 Streptomyces physcomitrii strain LD120 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66769 29 93.1 30 ....T.......................C CTGGGGCCGTACGTACTGGCCGGCCTAGGT 66828 29 100.0 32 ............................. TGATCTGCGCCGTCGACTTGTTCAGCGCCTTG 66889 29 100.0 32 ............................. TCACCGAACCCTTCCCCTCTCACATCACCGAG 66950 29 100.0 32 ............................. GCGCGCAGGACCAGGCCCGGCAGGCGGCGCTG 67011 29 100.0 32 ............................. CGATCATCGGCCACCGGACGATGGCCGATGCG 67072 29 100.0 32 ............................. GGTTCGGCGACTGCCGGTCAGGCGGCTACGCC 67133 29 93.1 32 ..C.T........................ GACACCAGCGAGCCGTCGGTGAACCCGACGTC 67194 29 93.1 32 ..C.T........................ GAGCCCCGATGACCCAGCCCACCCCGTACCGC 67255 29 96.6 32 ....T........................ GAGGCCACCCCGTGAAGCGCAGCCTCACCACC 67316 29 96.6 32 ....T........................ GCGCGCCAGGACGCGGACCGGGCCGCCGCCAA 67377 29 93.1 32 ..C.T........................ CTCGCAGGCGCCCGCAACCGCGAGCTGTGGGC 67438 29 89.7 32 ..C.T.....................C.. GAGGGCGAGCTGCTCTGGGCATTCCCGGGTGG 67499 29 89.7 32 ..C.T.....................C.. CGCACCACGTGGGAGGTGAGCGTGTCGCGGTC 67560 28 86.2 32 ....-........A..........A.C.. CCGAATCGCCCGATGTTGAGCACGACGAGCCC 67620 29 82.8 0 C...T...................A.C.C | ========== ====== ====== ====== ============================= ================================ ================== 15 29 94.3 32 GTTTGCTCCGCGCGAGCGGAGGTGGGTCG # Left flank : TCGGCCCCTTGCCCGAACCGCCGTCCTCCCGGCCGGTGTTGGAGCCGCAGGCGGTCAGCAGGCCGAGCGCGGTACCGGTGGCGAGCATCCTTCTGCGGCTGATGGTCATGAGCTGATCCCCCTGCGCTGATCTTCGATTGCTGCGGTGTCGGGCCCAACGATCAACCATGCAAGCGGATTACGACAGGGGTATTGCGGCCGCATGTCACCCCGCCTGGGGAGCGGGCTCGGGGCGATGCCCGGGATGCCGCCGCTTTGCCGTTCCTGTCCCCCGACCGCGAGCCTGCCGCCCACCGTCCACGCGAACAGGCCGCGACAACCACCGAGCAACTGCACACCCCTGCCGACCCACCCCGGCAACGCAAGCCGATCGGATCATTCCCGCTCCCCGAAGGGCTGCCTCGCCTACAGTGCGGACCGTGCGTACTGGTCACCCGCTGCCTGGCCTCACGCCTGGCAATGAAATGGCAAAGCCCCTCTGACGTTGCGGGTCAGGAAGT # Right flank : CCACCCCCTCAGGCTCGGCGAGGGCATGCCCGCCGGGAAGAGCCGGACGCTGAACGGCGTACGAGGCCACCCACGGAAAAGTGTGCCCCTCTCCCCCGCCATTGCCCCGTTCGGGTGGTTGATCAGCGGACTTGCCCTGTGAGCCGGGTGCTCCCGCATGCCCCAGCCGACTCGGGGCACTCGTCGGTGACGTCCCCGAGTGGGACCCGGATGAGAGCCGAAATGAGAGCCGAGCGGGAAGAGAGGTAGCCCTGTGTCGCAGGTCGAGGAGTCCATCGAGGTCGGTGTCCCGGTCAGTGCCGCCTACAACCAGTGGACCCAGTTCGAGGACTTTCCCAAGTTCATGGACGGCGTCGAACGGGTCGAGCAGCGCACGCCGACCCTGACCCACTGGAAGACCAGGATCGCCGGTGTCGAGCGGGAGTTCGACGCGGAGGTCACCGAGCAGATCCCCGACGAGCGGGTCGCGTGGACCAGCGTCGGCGGCGAGGCCCGGCAGG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTCCGCGCGAGCGGAGGTGGGTCG # Alternate repeat : GTCTTCTCCGCGCGAGCGGAGGTGGGTCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 321154-321548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWP010000007.1 Streptomyces physcomitrii strain LD120 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 321154 29 100.0 32 ............................. GTAGCGTCCGGGTCCGGGCCGACCGGCTTGTG 321215 29 100.0 32 ............................. GACGAAACCGGCATCATCGCCGCCGGCCGGGA 321276 29 100.0 32 ............................. AAGATTGAAGGATGCGGGGCGGTCAGGGCCCC 321337 29 100.0 33 ............................. TCGCCCTTCAGGGTGTTCAGGACGCGCTCGGGC 321399 29 96.6 31 .....................C....... AAGACCGGGGCCAACGGGGAGTCCTACCGGC 321459 29 93.1 32 ........T............C....... AGCCAGTCATACATTCTGGCGACACTGGGGGT 321520 29 93.1 0 .........A..T................ | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.5 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCGACCTCACGGAGTTCGGCATGACGGCGACCCCCGAGTCCCAGACCGTGTGGATCGGCTCGCCGCAGGGGCCCAGTTGGCGGCTTCCGGTCTGAGGTCTTCTGGTGCGGGCCACTCTGCTGCGGCATCGATGTCCCAACCCACTCATCGGCCGGGACTACTCGTCCAGGGCCGGTACTCATGGAGGGACGCCCGGCGCTGGGCCCCGCCGAGTACGAGGACGCGACCGCCGATAGAGGTCGATCTTCTCGCCACGCGTCGCTTCGAGAGGAGGCTGGCCGTTCCGGTGGGCGGTGGCTGTCGGTGGGGGGCAGACTGATGTCGGCCGGATCGGGTTGGCGGGGTAGGTGTGGGCTTCCGCGAGTCCGGGAGAGACTTTCTCCAGGTGCGGACTGCGTCGGTGCACGGCGTGGAGAGGGTGGGTTTTGTCGGATATGCCGGTCTCGGTGAAAGTTGATGAAAACCAGGGTGGAGCGGACTGAACGTCCAGGTCAGTTAGT # Right flank : CATCACCTTCGAGCTGCGCGACTCGACCGGCAGGTGCTCCCCGCCCATGCGGGACACCCCCGACCCGCGCCCGACTAAGGCACCCCTGCTGGCCCCCAGTTCCGCTCCACAGCCGTAGCAGTGCCCCTCGGCGTCCCTGCCCCTGCTGGCCCTCCGAACCAAAGCACCTCGCTCAGCCTCCCAGCACCGCCCCCAGCACCCCCACCACCTCCCGCGCCCGCTCCTCCGGCAGGTTCAGTGGTGGGGCCAGCCGCAGGGTTGCCGGGCCGATGGTGTTGAGGAGGAGGCCGGCTTCCTGGGCGGTCGACTGGATTGCGGCGGCTGTCGGTTCGGTGAGTTCGATCGCCAACAGCAGTCCTGTGCCCCGGACTTCGCGTACCAGTGGATGCCGGGGCCCTTCGATGCCCTCTCGCAACACGGCACCCACCCGCTGGACTTGAGGAAGCAGCTTCTCGTTCTCGATGGTGTCCAGTACGGCGAGGGCGGCCGCGCACGACACC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 128916-129723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWP010000003.1 Streptomyces physcomitrii strain LD120 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 128916 29 100.0 32 ............................. TGCCCCACGGGGGCGTACCGGTTCGAGTCCGG 128977 29 100.0 32 ............................. TCGATGAGGTTTTTCAGGGAGCGGCCGAGGCG 129038 29 100.0 32 ............................. GGGCAGTTCTGCGACTCGGACCAGGCCTGGCA 129099 29 100.0 32 ............................. TGGCTCTCGTCCTCTGGACAGGAGGCAGTGGA 129160 29 100.0 32 ............................. GCTCACCTGGTACTGCGCGCACATCTGCGATT 129221 29 100.0 32 ............................. CTGGACGTCCTCCCCGGCGGCCCCCGAGTCGC 129282 29 100.0 32 ............................. TGGCCGAGGACCGGCCGCTGTTGGCCGCGCGG 129343 29 100.0 32 ............................. CTGGGGTTCGCCCGGGCCAACGCCCGGCTGGT 129404 29 100.0 32 ............................. CCCGCGCTCGCCTTCGGGGTGCTCACCTCGAT 129465 29 100.0 32 ............................. GAGAACGCCCCCGGCCCCGTGGACCCGGACTC 129526 29 79.3 84 .................A.....CACTT. CGCGAGTCTGTCTACTGCCCGCCTGCTCGTGGTCTCCGCGCGTGCATGCTGGTATCGCCGTGAGACGATGCGGCAACGCCGACC 129639 29 82.8 27 .C.C..........G.........AC... TGAGGGTGGCGTTGTTCAAACTGCTTG 129695 29 86.2 0 ...T....................T..GG | ========== ====== ====== ====== ============================= ==================================================================================== ================== 13 29 96.0 36 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CGTGTTGGGGGCAACCCCTCACGAGTTCGAATCTCGTATCCTCCGCCAGTGCCTCACCGGGCACGATGTCGAGGGGCCCCACCGCGTGCGGTGGGGCCCCTCGACATTGCATTCAGCTCGCGTCGTCCTGGCGCTTCGACACCGCCGCCGGGCATGACCTCGGCGGCAACAGACGATCGACGCGGTGAGCCTGCCTCATCGATACGGCCTACGGGGCTCGGGCGCGGCAGAGCGAACCGTCCGCGCGGGCGGACGTCACCCTCGTCACACGGTGAGAATCTCTGACCTGCACCGCGGAGCACGCGCCTGCGGTCAGCAGCCGGCAGTCACAGGCTTCAGGCCGAGCACGAATCCGGCAGGCGCCGCCATCACGGTTCATGAGACTGGGAGTTGAGATGTCGCACCGAGCGCGGACAATGCAACCCACGACCGATGGGCCGGAGTTCCGCAAAGCAAGTAAAATTCGCCACCCGGCGAGGTAACACCGCAGGTCAACTCCT # Right flank : GCGCCCTGCCTGAGCTCCTTGCGATCCCCGAAGGGAAAAATTCATGAACTGAGGCTGGCGATTTTTACCTCCCCCAAGGCAACTGACAAAACGGCCTCTGGATATGCGCTACGGTATCGCCCTGCCGCTGAGACGGCGGCAGGGCGACGGACTCAACCTCCGCCCGAAAAAGGCGGACTTGGCGCGACAGTCGGCCAGACACACTCGCGCTCAAGTCCGCTCTTCGTCTCCGACTCTGTCCAGAATCAGAAGCACAAGGAGTGTACCGATGCCTCTCTTAGCCGCATCGACCCACGACGAACGCCACTGGCTGCTCGTTTGCGCGATGATTAGTGGCTCTCCAGGCCAACCCGCCGCCTGGGCACTACTGATCGCCGGAGGCGTCGGCCTCTCGTTCTGGATCGGACGCTGATCGACACCGGGGCGGGCGGTCGACGATTCCGCCCCGGTCATCAGCACGAAGGTCTACGCAAACGCCTCAGAAGGAACACAGGACATGG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 140294-141719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWP010000003.1 Streptomyces physcomitrii strain LD120 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 140294 29 100.0 32 ............................. ACGACGTCTCCTCGGGGTGCTCGGGGTGGTGG 140355 29 100.0 32 ............................. TCGGCCTGAGCGAGGGCACCGTGTCGACGCAC 140416 29 100.0 33 ............................. CACCGCGAGCATCCCCGGCGTCACCTCGGTGTG 140478 29 100.0 32 ............................. TCTCCGGCGCGCGGGCCAGAGACGTGCAGTAC 140539 29 96.6 32 ........................T.... CGGGACGGCCGTCTCGCGTGGACCGTGTGGGA 140600 29 96.6 32 ........................T.... TGGACCCAGTCGGTCGAGCTACGGCGCCTCGA 140661 29 93.1 32 ........................T...A GTCGTCGGTGTCGCTGCGCTTCCACAGGACGA 140722 29 96.6 32 ........................T.... GCACGGCCCTCATGGTCGAGATGCTGCTCTGG 140783 29 93.1 32 ........................T...G CACCCCGTGCACGTCCGCACGGTCACCGCCCT 140844 29 93.1 32 ...A....................T.... GCGGGGTCCGAGGCGAGGAGTTGGAGCATGGT 140905 29 93.1 32 ...A....................T.... ACTGCGGACTGCACCGGGCCGGGCAAGGCACC 140966 29 96.6 32 ........................T.... CCGGCCGCCCGCGCCGTGGTGCGCGCCGGGGT 141027 29 100.0 32 ............................. CGGTGCGGGCTGCTCTGCCAGATCCTCCAGGC 141088 29 96.6 32 .......................T..... GAGGTGTGGCCGCTGACCCGGTCTCCCGTCGG 141149 29 96.6 32 ..................A.......... GCAGAGAACAGGTCCGTCGCAACCGCGCAGGT 141210 29 96.6 32 .....G....................... TGAGCCCCCGCGAGCGGCTGCAAGCTCTGGAG 141271 29 100.0 32 ............................. CGCCGGTGCCCCGGCTGCTGTTCGTGCCTCCG 141332 29 100.0 32 ............................. GGGACGGCGGACCCCTTCGACGTCGGCGACGC 141393 29 100.0 32 ............................. GGCATGGGCGACTCCTCTGGTGCGGTGGCCCG 141454 29 96.6 32 ............................G GGGTCCAGCCTGGTCTGGGAGGCCCGGCCCAA 141515 29 100.0 32 ............................. GGGACGAACTCCAGGGCGCCGAGTGGGATGGT 141576 29 93.1 32 .G...................A....... TGGTCGACCGTACGGGCGTCGTGACGTCCGCG 141637 28 89.7 26 .....................-.AA.... CGAAGGACTGGCCTTCAGCCCCCGAC 141691 29 86.2 0 ..............C....A.A....T.. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 96.4 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CGGGCGCAACTACGGAGACGAGCCTGTCTGGTGACTGTCATCGTCCTGACCAACTGCCCTGCCGGACTACGCGGCTTCCTCACCCGCTGGATGCTCGAGATCTCCGCCGGCGTCTTCATCGGCTCCCCTTCCGCCCGGGTCCGGGACATCCTCTGGGAAGAGATACGCACATACTCCGGCCAAGGCCGCGCCCTCCTCGCCCACACCACCGACAACGAACAAGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCACCGACCATGAGGGCCTCACCCTCCTCCACCGCCCCAGCCAACCGAATGCCGCCCCAGGGGTGGCGAGAGCGCCCGGGGCATCGGGGCAGCCGCCGAAGCAGGGGTGGAGCAAGGCAGCGAAGCGACGACGGTTCGGAGGATGAGACGGCAAAGAATGTCACTTATGACCCATACACCGGAGTTTGGCAAAGCAGGTAAAGTCCACTGCCTGGCGGGATAGCACCGCAGGTCAGCTCCT # Right flank : CCCGCCGAAGAGCACGGAGATGATCCCCGCCCCGACCCGATCAGTGGCTTACGTGACAGCCGACGCGACGTAGCCTCGCACGGCTGTCGCCGCGCCCAGATGAATCGCGGGTTGCAGTTCGGGTTGCATTCGCGGTCGTTCAAGTGGGTCCACACGCGTGATCAATAACCATTGGATCGCAGGCCAGGACGATGACGAACCCACCCGAGCCCCAAGACGAACAGTTGGAAAGCGTGTTGGGGGCACCCCCTCACGAGTTCGAATCTCGTATCCTCCGCCAGTGCCTCACCGGGCACGATGTCGAGGGGCCCCACCGCTTGCGGTGGGGCCCCTCGGCGTGTGTGGCGGACGCTGCCGCTGGTTCTCGTGGGCGTGAGGGGTGCGTCGCGGCGGGTACGGTCGCCGAGAGGTCGTCAGCAGGGCAGTTCGGTCCGGCCCCGGGCGAGGGCGCTGCGGCGACTCACGGAGGTGTCCGGCGGCGCGGAGAGCCAGCACCTCCC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 399079-398561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWP010000003.1 Streptomyces physcomitrii strain LD120 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 399078 29 100.0 32 ............................. GGCGCCCGCATCCTGGTCCACGACCGCTTCGA 399017 29 100.0 32 ............................. ACCACCCCGGCCCGGCGCCCCGAACCTGCGGC 398956 29 100.0 32 ............................. GGCATGTTGTTCGGCGAGTACGCCGACTTCCT 398895 29 100.0 32 ............................. AACAGCTCCGCCTCCCGTTCCATCCACCGCGA 398834 29 100.0 32 ............................. CACGTAGCCCTTGCCCCCTTCCTCCTCCCCCA 398773 29 100.0 32 ............................. CTTGGGCCGGACGCCGGACTGGAACAAGTGGC 398712 29 96.6 32 ........................G.... GTCTCCGACATCTCATCAGTCGGGGCGAACAC 398651 29 96.6 33 ............T................ GGCCGTCGCGCGAGGCCGCCTGAGCGCAGGACA 398589 29 82.8 0 ...TT.......TC............T.. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 32 GTGCGCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGCGGATCGTCCACGACATCCAGGACCTCCTGGACCCCGGCAGCGACCGCGAGGCCCCCGACCCGGAAGAAGAACTCGTCGACCTCTGGGACCCCGTCACCGGAGCCGTCCCCGGCGGCATCAACCACGCCGCCGACGGCTGAAGCCCTCTCCCGGGAAGGACCTGCCCCATGGCCTCCATGATCGTCATCTCGGCGACCGCCGTCCCCGACCACCTCAGAGGCGCCCTCACCCGCTGGCTCCTCGAAGTCACCCCCGAGCTCTACGTCGGCACCGTCTCCGCCCGGGTACGCGACGAACTCTGGCAGTCGGTCACCGCCTGCGCGGACCAGGGCAACGCGGTCCTCGCCTACCCCACCGACAACGAACAGGGCTTCGAACTCCGCACGGCGGGGCCGCAACGCCGTACCCCCGTCGACTTCGACGGCCTGACCTTGATCGCCTTCGACCGACCGAGTCAAGAAATGGCAATGCCCCTCTAAGGGTGCAGGTCAGGAAGT # Right flank : GGTGAGTCAGTGCCGTCTCGGTCAGGTCATCCGTTCTCTCTGCGGAAGCGGAGGTCATGGCCTGAGCGGTAAGCGGGGCTTCGGATGGGCTGGCTTTCCGGTACGGCGGCGCGCCAGGAAAACCGCTGGAGGCGTGGCCGCCCCGGTGCTGGGATTGCCCCCATGGCAGCTGAGGCGGCGGTGGTCGTGGATCGCGGGGCGTATCCGGAGGCGCGGACGCCCTGGGAGGAGGAGGGCTGGCGGCGGGAGGTGTTCGCCTGGGCCGGGCGGAAGTTGGCGGCGCGTGGTCTGCGGGTCACCGGACCGCTGAGGGTGCGGTTGCGGCCCTGGTCGGTGCTGGTGCGGATGCCTGTCGCGGGCCAGGGGGCCGTGTGGTTCAAGGCGAATCCGCCGGCCAGTGCCTTCGAGGCGCCGCTCGCTGCCGCACTGGCCCGGTGGGTGCCGGAGCACGTACTCGCGCCGTTGGCCGTCGATGCCGAGCGGGGCTGGTCGCTGTTGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 408893-409530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWWP010000003.1 Streptomyces physcomitrii strain LD120 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 408893 29 100.0 32 ............................. TACACGTCCGGGCGGCGCACGAACCGCTTCTC 408954 29 100.0 32 ............................. TCCGCACCCTGTACCGGGACGCCGTGCGTGAT 409015 29 100.0 32 ............................. CCGCCCGGTAGTCGGGGTGATGGCGCCACATC 409076 29 100.0 32 ............................. AGGTCGCCGCCCGCGAGTTCGCCGCTACGGAT 409137 29 100.0 32 ............................. TCCAGCGCGTCCGGCAGGGGCGAGGCGCCGCC 409198 29 100.0 31 ............................. TCCTCTCCGGTCTGGTTCGGGCCTTGGAAGT 409258 29 100.0 32 ............................. CAGCACTCGGACCCGATCACCTCCGACGAGGA 409319 29 100.0 32 ............................. CGCACCCCTCGGGCAGGCCACCGTGACGGGCC 409380 29 100.0 32 ............................. GTCATGCGGTGGCGGGTGCGGAGGACGACGAT 409441 29 100.0 32 ............................. GTCGCCTTACTGCTCGCGTTCACCGGGGCCCT 409502 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 33 GTGCGCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGCCACATGCGCGTACTCGGGCTGCCCGCCCACCACCTCGAACAAGGCGGGCACCTGCGCCTGAAAGGCAGGCGAGATCTTCCCCAGATCATGCAACCCCGCCCAGAACGAGAGCACCGCCCGGCACTCCGACTCCGACAGCCCCAACTGCCCGGCGAACCGCTCCCGGACCCGCTGCTCCAGCAACTCGTCCCACAGCACACCGAACGTCGCCGCCACATCCAGCAGATGACACATCACGGGGTACGGCCCGGCCAGCCCGTGCTCCTTGCCCCACAGACGCCCGTCCGGCAACACCACTGCCTGCCACGCATCTTGACTGTCAGTCATGACGCATGTCCTACCAGCCCGCACCGACAACGCAGGCTGATCAGGCCATTCCCACTCCCCACAGGGCCACGCCGCCTACAGTGCGCACCATGCGTACTGCTCACTCCCGGCCCTGCACTTCACCTGGCAATGAAATGGCAAAGCCCTTCTGACGCCGCAGGTCAGGAAGT # Right flank : GGGTCTGCGGATAGGGGGCGCCTTGACGACCATGCCGTACACCGCAGACAGACATGGCCGCGACTCTGCCCAACGTACCTTTCGCCTGGGCAAGATAGCGACGGCCAGGTTCTTCGCTGGGGAGGTGCTTCCGTTGCTCGCCGCTCAACGCGCCTGCGCCGTGCGGCAGGACGGCGTCTTGGCGTCCGTGCCGGAGGAGGCATGGTGACCGCGGAGATGCCGAGCCCCGCCGGTGTCGGCGAGCCGCGGACCAGCCACGCGCGTGTCGGCTGCCGCGCACGGTCGCCTCACCCGCACGATCCTCACCATCGCGTTCCAAGGAGCCAGCCGTGACCGAACCGCCCGCCGCCGTCCTCGCCCGAGGCCATCAGACCATGCTGCTGGCGCACCGTGCCATGGTGCGCGACCTGGAGCGCATCGGCCTCGCCAGCCGCACGCTGCCGGCGGCCGACGCGGATCGCACCAGCGCGTTGCGCGCGTATACGCACACGATCTTCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //